CX288757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SYNPW (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH7803) GN=rplA PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 3.283e-23 Identity = 59/144 (40.97%), Postives = 81/144 (56.25%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++AIK VK NA A FDETVEAH RL I P+ T+ +R T+ LPHG + VR L+E I S G++D + +T MP++ K+ ++L GLMPNPK GTVT D+A A+ E K G ++F+ D Sbjct: 23 LEAIKLVKENATAKFDETVEAHARLGIDPKYTDQQLRTTVALPHGTGQTVRIAVITRGEKVAEAKAAGAELAGDEDLVETI-SKGEMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAINEFKAGKLEFRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROM9 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplA PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 4.288e-23 Identity = 57/156 (36.54%), Postives = 88/156 (56.41%), Query Frame = 1 Query: 67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 S K E R + ++A+ +K NA A FDET+EAH+RL I P+ T+ +R T+ LPHG ++++ L+E I + G +D + +T MP++ K+ ++L GLMPNPK GTVTND+A A++E K G ++F+ D Sbjct: 12 STKIEDR-IYPPLEALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIKIAVITSGENVSKAKSAGADLFGEEDLVESI-NKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAGKLEFRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_SYNR3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain RCC307) GN=rplA PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.629e-22 Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++A+ VKANA A FDET+EAHVRL I P+ T+ +R T+ LP G +++R +L++ IA G++D + +T MP++ K+ ++L GLMPNPK GTVT DV A+ E K G ++F+ D Sbjct: 23 LEAVSLVKANATAKFDETIEAHVRLGIDPKYTDQQLRTTVALPKGTGRSIRIAVITRGEKVAEAKAAGAELVGDEELVDSIAG-GQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKTGTVTTDVTNAINEFKAGKLEFRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROM0 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplA PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.629e-22 Identity = 52/144 (36.11%), Postives = 83/144 (57.64%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++A+ +K NA A FDET+EAH+RL I P+ T+ +R T+ LPHG ++++ L+E I + G ++ + +T MP++ K+ ++L GLMPNPK GTVTND+A A++E K G ++F+ D Sbjct: 23 LEALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIKIAVITSGENVSKAKAAGADLFGEEDLVESI-NKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAGKLEFRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROMS (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain AS9601) GN=rplA PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.128e-22 Identity = 52/144 (36.11%), Postives = 83/144 (57.64%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++A+ +K NA A FDET+EAH+RL I P+ T+ +R T+ LPHG ++++ L+E I + G ++ + +T MP++ K+ ++L GLMPNPK GTVTND+A A++E K G ++F+ D Sbjct: 23 LEALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVVLPHGTGQSIKIAVITSGENVSKAKAAGADLFGEEDLVESI-NKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAGKLEFRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROM2 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplA PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.128e-22 Identity = 52/144 (36.11%), Postives = 82/144 (56.94%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 ++A+ +K NA A FDET+EAH+RL I P+ T+ +R T+ LPHG +++R L+E I + G ++ + +T MP++ K+ ++L GLMPNPK GTVTND+ A++E K G ++F+ D Sbjct: 23 LEALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIRIAVITSGENVSKAKSAGADLFGEEDLVESI-NKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIGNAIKEFKAGKLEFRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_ANATD (50S ribosomal protein L1 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplA PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.128e-22 Identity = 59/156 (37.82%), Postives = 85/156 (54.49%), Query Frame = 1 Query: 67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +K + + D +AI+ + A FDETVE HVRL + PR + VRGT+ LP+G K+VR +L+ +I + G D + C +T M + ++ KIL GLMPNPK GTVT DVA+AV+EAK G ++F++D Sbjct: 11 AKLVDKTKLYDPEEAIELALKTSYAKFDETVEVHVRLNVDPRHADQQVRGTVVLPNGTGKSVRVLVFAKGDKAKEAEEAGADYVGAEELVAKIQNEGWTDFDVCIATPDMMGLVGRLGKILGPKGLMPNPKSGTVTMDVAKAVKEAKAGRVEFRLD 166
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_PROM5 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplA PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 2.779e-22 Identity = 57/156 (36.54%), Postives = 87/156 (55.77%), Query Frame = 1 Query: 67 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 S K E R L +A+ +K NA A FDET+EAH+RL I P+ T+ +R T+ LPHG ++++ L+E I + G +D + +T MP++ K+ ++L GLMPNPK GTVT+D+A A++E K G ++F+ D Sbjct: 12 STKIEDRTYAPL-EALAIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIKIAVITSGENVAKAKSAGADLFGEEDLVESI-NKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTSDIASAIKEFKAGKLEFRAD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_KINRD (50S ribosomal protein L1 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rplA PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22 Identity = 56/144 (38.89%), Postives = 79/144 (54.86%), Query Frame = 1 Query: 103 MDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 +DA+K + + +D TVE RL + PRK + +VRGT+NLPHG K R +LI+E+A G+LD + +T M ++ ++ K+L GLMPNPK GTVT DVA+AV E K G I+F+ D Sbjct: 23 LDAVKLARETSTVKYDATVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFAVGDRAAQAEAAGADIVGGDELIDEVAK-GRLDFDAAVATPDLMGKVGRLGKVLGPRGLMPNPKTGTVTMDVAKAVSEIKGGKIEFRTD 165
BLAST of CX288757 vs. ExPASy Swiss-Prot
Match: RL1_AGRT5 (50S ribosomal protein L1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplA PE=3 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22 Identity = 56/145 (38.62%), Postives = 81/145 (55.86%), Query Frame = 1 Query: 100 LMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRXXXXXXXXXXXXXXXXXXXXXXXLKLIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMD 534 L DAI VK A A FDETVE + L + PR + +VRG +NLP+G + VR +L+E I GK+D ++C +T MP + ++ K+L G+MPNPK GTVT DVA AV+ +K G ++F+++ Sbjct: 23 LTDAISMVKERAVAKFDETVEVSMNLGVDPRHADQMVRGVVNLPNGTGRDVRVAVFARGVKADEATAAGADVVGAEELVE-IVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVE 166 The following BLAST results are available for this feature:
BLAST of CX288757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288757 ID=CX288757; Name=CX288757; organism=Citrus clementina; type=EST; length=538bpback to top |