CX295713

Overview
NameCX295713
Unique NameCX295713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB1A_ARATH (ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2)

HSP 1 Score: 343.584 bits (880), Expect = 6.638e-94
Identity = 168/234 (71.79%), Postives = 198/234 (84.62%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDGGIQLPIFSEWWLAKEKFAVIDSFILSSFPGSTFQGCNGLSV 717
            S  I   GDPPIVILDEPSTGMDP+AKRFMW+VISRLSTR GKTAVILTTHSMNEAQALCTRIGIMVGG+LRCIGSPQHLKTR+GN LELEVKP EVS+V+LE+ CQIIQ+ +F++P+Q RSLL DLEVCIG  DSI+ + A+A+EISLS EM+  + ++LGNE+R+ TL+      D  F +QLSEQL RDGGI LPIF+EWWL KEKF+ +DSFI SSFPG+TF+ CNGLS+
Sbjct: 1599 SVAIAMIGDPPIVILDEPSTGMDPVAKRFMWDVISRLSTRSGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRYGNHLELEVKPNEVSNVELENFCQIIQQWLFNVPTQPRSLLGDLEVCIGVSDSITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLVPPLPEEDVRFDDQLSEQLFRDGGIPLPIFAEWWLTKEKFSALDSFIQSSFPGATFKSCNGLSI 1832          

HSP 2 Score: 76.2554 bits (186), Expect = 1.977e-13
Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 270
            S  I   G+  ++ILDEP++GMDP + R  W++I ++  ++G+  ++LTTHSM+EA+ L  RIGIM  G L+C GS   LK  +G
Sbjct:  693 SLGIALIGNSKVIILDEPTSGMDPYSMRLTWQLIKKI--KKGRI-ILLTTHSMDEAEELGDRIGIMANGSLKCCGSSIFLKHHYG 774          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA3_MOUSE (ATP-binding cassette sub-family A member 3 OS=Mus musculus GN=Abca3 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.613e-23
Identity = 47/93 (50.54%), Postives = 69/93 (74.19%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 294
            S  I   G+P ++ LDEPSTGMDP+A+R +W+ ++R   R+   A+++T+HSM E +ALCTR+ IMV GQ +C+GSPQHLK++FG+   L+ K
Sbjct: 1524 STGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVAR--ARESGKAIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLQAK 1614          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA3_HUMAN (ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.107e-23
Identity = 48/93 (51.61%), Postives = 68/93 (73.12%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 294
            S  I   G+P ++ LDEPSTGMDP+A+R +W+ ++R   R+   A+I+T+HSM E +ALCTR+ IMV GQ +C+GSPQHLK++FG+   L  K
Sbjct: 1524 STGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVAR--ARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLRAK 1614          

HSP 2 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 36/102 (35.29%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   49 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERV 354
            ++ILDEP++GMD I++R +W+++ R   ++    ++LTTH M+EA  L  RI IM  G+L+C GS   LK ++G    + +   +    + ED+ Q++   V
Sbjct:  685 VLILDEPTSGMDAISRRAIWDLLQR---QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKQKYGAGYHMTL--VKEPHCNPEDISQLVHHHV 781          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA5_RAT (ATP-binding cassette sub-family A member 5 OS=Rattus norvegicus GN=Abca5 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.784e-22
Identity = 71/208 (34.13%), Postives = 115/208 (55.29%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDGGIQLPIFSEWWLAKEKFAVI 654
            G+P + +LDEPSTGMDP AK+ MW  I R + +  K A +LTTH M EA+A+C R+ IMV GQLRCIG+ QHLK++FG   FLE+++K   + +++++ L + IQ  +F   S++ S    L   I   D + S + + A++  ++               I+    S ++ +++F E   EQ   D        + WW  +++  V+
Sbjct: 1449 GNPQVTLLDEPSTGMDPRAKQHMWRAI-RTAFKNKKRAALLTTHYMEEAEAVCDRVAIMVSGQLRCIGTVQHLKSKFGKGYFLEIKLKDW-IENLEIDRLQREIQ-YIFPNASRQESFSSILAYKIPKED-VQSLSQSFAKLEEAKHTF-----------AIEEYSFSQATLEQVFVELTKEQEEEDNSCGTLNSTLWWERRQEDRVV 1641          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCAC_HUMAN (ATP-binding cassette sub-family A member 12 OS=Homo sapiens GN=ABCA12 PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.330e-22
Identity = 66/169 (39.05%), Postives = 99/169 (58.58%), Query Frame = 1
Query:    1 DSAEASCRIGTR----------GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLD-DLEVCIGGIDSI---SSENATAAEIS 459
            D A + C  GT+          G P I++LDEPS+GMDP +KR +W++IS     Q K +VILT+HSM E +ALCTR+ IMV G+ +CIGS QH+K+RFG    +++ +K  +V+   L    Q+   + + +  Q  S+L+  + V  GG+ +I      N TA  I+
Sbjct: 2384 DRATSMCSYGTKRKLSTALALIGKPSILLLDEPSSGMDPKSKRHLWKIISE--EVQNKCSVILTSHSMEECEALCTRLAIMVNGKFQCIGSLQHIKSRFGRGFTVKVHLKNNKVTMETLTKFMQLHFPKTY-LKDQHLSMLEYHVPVTAGGVANIFDLLETNKTALNIT 2549          

HSP 2 Score: 80.1073 bits (196), Expect = 1.369e-14
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLC 333
            S  I   G   +VILDEPSTG+DP ++R +W+VIS+  T +    +IL+TH ++EA+ L  RI  +  G LRC GSP +LK  FG+   L +   +  +++   +C
Sbjct: 1488 SISIALIGGSRVVILDEPSTGVDPCSRRSIWDVISKNKTAR---TIILSTHHLDEAEVLSDRIAFLEQGGLRCCGSPFYLKEAFGDGYHLTLTKKKSPNLNANAVC 1590          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA5_MOUSE (ATP-binding cassette sub-family A member 5 OS=Mus musculus GN=Abca5 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.330e-22
Identity = 71/208 (34.13%), Postives = 114/208 (54.81%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDGGIQLPIFSEWWLAKEKFAVI 654
            G+P + +LDEPSTGMDP AK+ MW  I R + +  K A +LTTH M EA+A+C R+ IMV GQLRCIG+ QHLK++FG   FLE+++K   + +++++ L + IQ  +F   S++ S    L   I   D + S + + A++  ++               I+    S ++ +++F E   EQ   D        + WW   ++  V+
Sbjct: 1449 GNPQVTLLDEPSTGMDPRAKQHMWRAI-RTAFKNKKRAALLTTHYMEEAEAVCDRVAIMVSGQLRCIGTVQHLKSKFGKGYFLEIKLKDW-IENLEIDRLQREIQ-YIFPNASRQESFSSILAFKIPKED-VQSLSQSFAKLEEAKRTF-----------AIEEYSFSQATLEQVFVELTKEQEEEDNSCGTLASTLWWERTQEDRVV 1641          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA5_HUMAN (ATP-binding cassette sub-family A member 5 OS=Homo sapiens GN=ABCA5 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTEVSSVDLEDLCQIIQ 345
            G+P I +LDEPSTGMDP AK+ MW  I R + +  K A ILTTH M EA+A+C R+ IMV GQLRCIG+ QHLK++FG   FLE+++K   + +++++ L + IQ
Sbjct: 1449 GNPQITLLDEPSTGMDPKAKQHMWRAI-RTAFKNRKRAAILTTHYMEEAEAVCDRVAIMVSGQLRCIGTVQHLKSKFGKGYFLEIKLKDW-IENLEVDRLQREIQ 1551          

HSP 2 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 31/85 (36.47%), Postives = 50/85 (58.82%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 270
            S  I   G+P I++LDEP+ GMDP ++  +W +   L  R+     + +TH M+EA  L  R  ++  G L+C+GS   LK+++G
Sbjct:  624 SLGIAVLGNPKILLLDEPTAGMDPCSRHIVWNL---LKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWG 705          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA7_RAT (ATP-binding cassette sub-family A member 7 OS=Rattus norvegicus GN=Abca7 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.364e-21
Identity = 50/91 (54.95%), Postives = 68/91 (74.73%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF--GNFLELEVKPTE 303
            GDP +V LDEP+TGMDP A+RF+W  +  +  R+G++ V+LT+HSM E +ALCTR+ IMV G+ RC+GS QHLK+RF  G+ L L V P +
Sbjct: 1967 GDPAVVFLDEPTTGMDPSARRFLWNNLLSV-VREGRS-VVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKSRFGAGHTLTLRVPPDQ 2055          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB8A_ARATH (ABC transporter A family member 8 OS=Arabidopsis thaliana GN=ABCA8 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.364e-21
Identity = 55/137 (40.15%), Postives = 81/137 (59.12%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQ---ERVFDIPSQRRSLLDDLEVCIGGI 417
            S  I   G P +V +DEPSTG+DP +++ +W+V+ R      K A+ILTTHSM EA+ LC RIGI V G L+CIG+P+ LK+R+G    L V  +E    ++E L   I    ++++     ++  L   EV IG +
Sbjct:  734 SVAISLIGSPKVVYMDEPSTGLDPASRKSLWDVVKRAKR---KGAIILTTHSMEEAEILCDRIGIFVDGSLQCIGNPKELKSRYGGSYVLTVTTSEEHEKEVEQLVHNISTNAKKIYRTAGTQKFELPKQEVKIGEV 867          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA7_MOUSE (ATP-binding cassette sub-family A member 7 OS=Mus musculus GN=Abca7 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF--GNFLELEVKPTE 303
            GDP +V LDEP+TGMDP A+RF+W   S LS  +   +V+LT+HSM E +ALCTR+ IMV G+ RC+GS QHLK RF  G+ L L V P +
Sbjct: 1956 GDPAVVFLDEPTTGMDPSARRFLWN--SLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSSQHLKGRFGAGHTLTLRVPPDQ 2044          

HSP 2 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 270
            S  I   G   +VI+DEP+ G+DP ++R +WE++  L  R+G+T +IL+TH ++EA+ L  R+ ++ GG L C GSP  L+   G
Sbjct:  946 SVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELL--LKYREGRT-LILSTHHLDEAELLGDRVAMVAGGSLCCCGSPLFLRRHLG 1027          
The following BLAST results are available for this feature:
BLAST of CX295713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
AB1A_ARATH6.638e-9471.79ABC transporter A family member 1 OS=Arabidopsis t... [more]
ABCA3_MOUSE1.613e-2350.54ATP-binding cassette sub-family A member 3 OS=Mus ... [more]
ABCA3_HUMAN2.107e-2351.61ATP-binding cassette sub-family A member 3 OS=Homo... [more]
ABCA5_RAT1.784e-2234.13ATP-binding cassette sub-family A member 5 OS=Ratt... [more]
ABCAC_HUMAN2.330e-2239.05ATP-binding cassette sub-family A member 12 OS=Hom... [more]
ABCA5_MOUSE2.330e-2234.13ATP-binding cassette sub-family A member 5 OS=Mus ... [more]
ABCA5_HUMAN5.190e-2252.38ATP-binding cassette sub-family A member 5 OS=Homo... [more]
ABCA7_RAT3.364e-2154.95ATP-binding cassette sub-family A member 7 OS=Ratt... [more]
AB8A_ARATH3.364e-2140.15ABC transporter A family member 8 OS=Arabidopsis t... [more]
ABCA7_MOUSE4.393e-2156.04ATP-binding cassette sub-family A member 7 OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionC05075B03SK DroRLeaf1 Citrus clementina cDNA clone C05075B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295713 ID=CX295713; Name=CX295713; organism=Citrus clementina; type=EST; length=737bp
GATTCGGCCGAGGCCTCGTGCCGAATCGGCACGAGGGGAGATCCTCCAAT
TGTTATTCTTGATGAGCCATCAACAGGCATGGATCCAATTGCTAAACGAT
TCATGTGGGAAGTGATATCTCGTTTATCAACTAGACAAGGGAAGACAGCA
GTTATCCTTACAACCCACAGCATGAATGAAGCTCAAGCATTATGCACCAG
AATTGGAATAATGGTTGGCGGCCAGCTTAGATGTATTGGAAGTCCCCAGC
ATTTAAAAACACGGTTTGGGAATTTTCTTGAGCTAGAGGTTAAACCTACT
GAGGTTAGCTCGGTAGATTTGGAAGACCTTTGCCAGATTATTCAAGAAAG
AGTATTTGACATTCCTTCTCAGCGAAGGAGCTTGTTAGATGACCTTGAAG
TTTGCATTGGTGGTATTGACTCCATTTCATCAGAAAATGCAACGGCGGCA
GAAATTAGCTTGTCACAGGAAATGTTACTTATAGTTGGGCGCTGGCTTGG
CAATGAAGAAAGAATAAAAACACTTATAAGTTCCTCCTCTTCTCCTGATA
GAATATTTGGGGAACAATTGTCTGAGCAGTTGGTTCGAGATGGGGGTATA
CAATTGCCGATATTCTCCGAGTGGTGGTTGGCCAAAGAAAAGTTTGCGGT
GATTGATTCTTTCATTTTATCTTCATTTCCTGGCTCAACATTTCAGGGGT
GCAACGGGTTGAGTGTCAATATCAGCTACATTCTCGG
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