CX295713
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB1A_ARATH (ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2) HSP 1 Score: 343.584 bits (880), Expect = 6.638e-94 Identity = 168/234 (71.79%), Postives = 198/234 (84.62%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDGGIQLPIFSEWWLAKEKFAVIDSFILSSFPGSTFQGCNGLSV 717 S I GDPPIVILDEPSTGMDP+AKRFMW+VISRLSTR GKTAVILTTHSMNEAQALCTRIGIMVGG+LRCIGSPQHLKTR+GN LELEVKP EVS+V+LE+ CQIIQ+ +F++P+Q RSLL DLEVCIG DSI+ + A+A+EISLS EM+ + ++LGNE+R+ TL+ D F +QLSEQL RDGGI LPIF+EWWL KEKF+ +DSFI SSFPG+TF+ CNGLS+ Sbjct: 1599 SVAIAMIGDPPIVILDEPSTGMDPVAKRFMWDVISRLSTRSGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRYGNHLELEVKPNEVSNVELENFCQIIQQWLFNVPTQPRSLLGDLEVCIGVSDSITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLVPPLPEEDVRFDDQLSEQLFRDGGIPLPIFAEWWLTKEKFSALDSFIQSSFPGATFKSCNGLSI 1832 HSP 2 Score: 76.2554 bits (186), Expect = 1.977e-13 Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 270 S I G+ ++ILDEP++GMDP + R W++I ++ ++G+ ++LTTHSM+EA+ L RIGIM G L+C GS LK +G Sbjct: 693 SLGIALIGNSKVIILDEPTSGMDPYSMRLTWQLIKKI--KKGRI-ILLTTHSMDEAEELGDRIGIMANGSLKCCGSSIFLKHHYG 774
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA3_MOUSE (ATP-binding cassette sub-family A member 3 OS=Mus musculus GN=Abca3 PE=2 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.613e-23 Identity = 47/93 (50.54%), Postives = 69/93 (74.19%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 294 S I G+P ++ LDEPSTGMDP+A+R +W+ ++R R+ A+++T+HSM E +ALCTR+ IMV GQ +C+GSPQHLK++FG+ L+ K Sbjct: 1524 STGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVAR--ARESGKAIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLQAK 1614
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA3_HUMAN (ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3 PE=1 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 2.107e-23 Identity = 48/93 (51.61%), Postives = 68/93 (73.12%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 294 S I G+P ++ LDEPSTGMDP+A+R +W+ ++R R+ A+I+T+HSM E +ALCTR+ IMV GQ +C+GSPQHLK++FG+ L K Sbjct: 1524 STGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVAR--ARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLRAK 1614 HSP 2 Score: 70.4774 bits (171), Expect = 1.085e-11 Identity = 36/102 (35.29%), Postives = 62/102 (60.78%), Query Frame = 1 Query: 49 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERV 354 ++ILDEP++GMD I++R +W+++ R ++ ++LTTH M+EA L RI IM G+L+C GS LK ++G + + + + ED+ Q++ V Sbjct: 685 VLILDEPTSGMDAISRRAIWDLLQR---QKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKQKYGAGYHMTL--VKEPHCNPEDISQLVHHHV 781
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA5_RAT (ATP-binding cassette sub-family A member 5 OS=Rattus norvegicus GN=Abca5 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.784e-22 Identity = 71/208 (34.13%), Postives = 115/208 (55.29%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDGGIQLPIFSEWWLAKEKFAVI 654 G+P + +LDEPSTGMDP AK+ MW I R + + K A +LTTH M EA+A+C R+ IMV GQLRCIG+ QHLK++FG FLE+++K + +++++ L + IQ +F S++ S L I D + S + + A++ ++ I+ S ++ +++F E EQ D + WW +++ V+ Sbjct: 1449 GNPQVTLLDEPSTGMDPRAKQHMWRAI-RTAFKNKKRAALLTTHYMEEAEAVCDRVAIMVSGQLRCIGTVQHLKSKFGKGYFLEIKLKDW-IENLEIDRLQREIQ-YIFPNASRQESFSSILAYKIPKED-VQSLSQSFAKLEEAKHTF-----------AIEEYSFSQATLEQVFVELTKEQEEEDNSCGTLNSTLWWERRQEDRVV 1641
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCAC_HUMAN (ATP-binding cassette sub-family A member 12 OS=Homo sapiens GN=ABCA12 PE=1 SV=3) HSP 1 Score: 105.916 bits (263), Expect = 2.330e-22 Identity = 66/169 (39.05%), Postives = 99/169 (58.58%), Query Frame = 1 Query: 1 DSAEASCRIGTR----------GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLD-DLEVCIGGIDSI---SSENATAAEIS 459 D A + C GT+ G P I++LDEPS+GMDP +KR +W++IS Q K +VILT+HSM E +ALCTR+ IMV G+ +CIGS QH+K+RFG +++ +K +V+ L Q+ + + + Q S+L+ + V GG+ +I N TA I+ Sbjct: 2384 DRATSMCSYGTKRKLSTALALIGKPSILLLDEPSSGMDPKSKRHLWKIISE--EVQNKCSVILTSHSMEECEALCTRLAIMVNGKFQCIGSLQHIKSRFGRGFTVKVHLKNNKVTMETLTKFMQLHFPKTY-LKDQHLSMLEYHVPVTAGGVANIFDLLETNKTALNIT 2549 HSP 2 Score: 80.1073 bits (196), Expect = 1.369e-14 Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLC 333 S I G +VILDEPSTG+DP ++R +W+VIS+ T + +IL+TH ++EA+ L RI + G LRC GSP +LK FG+ L + + +++ +C Sbjct: 1488 SISIALIGGSRVVILDEPSTGVDPCSRRSIWDVISKNKTAR---TIILSTHHLDEAEVLSDRIAFLEQGGLRCCGSPFYLKEAFGDGYHLTLTKKKSPNLNANAVC 1590
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA5_MOUSE (ATP-binding cassette sub-family A member 5 OS=Mus musculus GN=Abca5 PE=1 SV=2) HSP 1 Score: 105.916 bits (263), Expect = 2.330e-22 Identity = 71/208 (34.13%), Postives = 114/208 (54.81%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDGGIQLPIFSEWWLAKEKFAVI 654 G+P + +LDEPSTGMDP AK+ MW I R + + K A +LTTH M EA+A+C R+ IMV GQLRCIG+ QHLK++FG FLE+++K + +++++ L + IQ +F S++ S L I D + S + + A++ ++ I+ S ++ +++F E EQ D + WW ++ V+ Sbjct: 1449 GNPQVTLLDEPSTGMDPRAKQHMWRAI-RTAFKNKKRAALLTTHYMEEAEAVCDRVAIMVSGQLRCIGTVQHLKSKFGKGYFLEIKLKDW-IENLEIDRLQREIQ-YIFPNASRQESFSSILAFKIPKED-VQSLSQSFAKLEEAKRTF-----------AIEEYSFSQATLEQVFVELTKEQEEEDNSCGTLASTLWWERTQEDRVV 1641
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA5_HUMAN (ATP-binding cassette sub-family A member 5 OS=Homo sapiens GN=ABCA5 PE=2 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22 Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTEVSSVDLEDLCQIIQ 345 G+P I +LDEPSTGMDP AK+ MW I R + + K A ILTTH M EA+A+C R+ IMV GQLRCIG+ QHLK++FG FLE+++K + +++++ L + IQ Sbjct: 1449 GNPQITLLDEPSTGMDPKAKQHMWRAI-RTAFKNRKRAAILTTHYMEEAEAVCDRVAIMVSGQLRCIGTVQHLKSKFGKGYFLEIKLKDW-IENLEVDRLQREIQ 1551 HSP 2 Score: 67.3958 bits (163), Expect = 9.182e-11 Identity = 31/85 (36.47%), Postives = 50/85 (58.82%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 270 S I G+P I++LDEP+ GMDP ++ +W + L R+ + +TH M+EA L R ++ G L+C+GS LK+++G Sbjct: 624 SLGIAVLGNPKILLLDEPTAGMDPCSRHIVWNL---LKYRKANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSMFLKSKWG 705
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA7_RAT (ATP-binding cassette sub-family A member 7 OS=Rattus norvegicus GN=Abca7 PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.364e-21 Identity = 50/91 (54.95%), Postives = 68/91 (74.73%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF--GNFLELEVKPTE 303 GDP +V LDEP+TGMDP A+RF+W + + R+G++ V+LT+HSM E +ALCTR+ IMV G+ RC+GS QHLK+RF G+ L L V P + Sbjct: 1967 GDPAVVFLDEPTTGMDPSARRFLWNNLLSV-VREGRS-VVLTSHSMEECEALCTRLAIMVNGRFRCLGSAQHLKSRFGAGHTLTLRVPPDQ 2055
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB8A_ARATH (ABC transporter A family member 8 OS=Arabidopsis thaliana GN=ABCA8 PE=2 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 3.364e-21 Identity = 55/137 (40.15%), Postives = 81/137 (59.12%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQ---ERVFDIPSQRRSLLDDLEVCIGGI 417 S I G P +V +DEPSTG+DP +++ +W+V+ R K A+ILTTHSM EA+ LC RIGI V G L+CIG+P+ LK+R+G L V +E ++E L I ++++ ++ L EV IG + Sbjct: 734 SVAISLIGSPKVVYMDEPSTGLDPASRKSLWDVVKRAKR---KGAIILTTHSMEEAEILCDRIGIFVDGSLQCIGNPKELKSRYGGSYVLTVTTSEEHEKEVEQLVHNISTNAKKIYRTAGTQKFELPKQEVKIGEV 867
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA7_MOUSE (ATP-binding cassette sub-family A member 7 OS=Mus musculus GN=Abca7 PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21 Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF--GNFLELEVKPTE 303 GDP +V LDEP+TGMDP A+RF+W S LS + +V+LT+HSM E +ALCTR+ IMV G+ RC+GS QHLK RF G+ L L V P + Sbjct: 1956 GDPAVVFLDEPTTGMDPSARRFLWN--SLLSVVREGRSVVLTSHSMEECEALCTRLAIMVNGRFRCLGSSQHLKGRFGAGHTLTLRVPPDQ 2044 HSP 2 Score: 68.9366 bits (167), Expect = 3.156e-11 Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 270 S I G +VI+DEP+ G+DP ++R +WE++ L R+G+T +IL+TH ++EA+ L R+ ++ GG L C GSP L+ G Sbjct: 946 SVAIAFVGGSRVVIMDEPTAGVDPASRRGIWELL--LKYREGRT-LILSTHHLDEAELLGDRVAMVAGGSLCCCGSPLFLRRHLG 1027 The following BLAST results are available for this feature:
BLAST of CX295713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX295713 ID=CX295713; Name=CX295713; organism=Citrus clementina; type=EST; length=737bpback to top |