DY258691

Overview
NameDY258691
Unique NameDY258691
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1253
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258691_ssr120 microsatellite DY258691_ssr120:120..134. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258691_ssr1175 microsatellite DY258691_ssr1175:1175..1186. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY258691 vs. ExPASy Swiss-Prot
Match: EIF3A_ARATH (Eukaryotic translation initiation factor 3 subunit A OS=Arabidopsis thaliana GN=TIF3A1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.501e-13
Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:  517 EMIPFFDFAVVEKISVEAVKHNFIAMKIDHMKGVVVFCNLGLESAPPLHHLTIFVQN 687
            +++PFF F+ VEKISV+AVK+NF+AMK+DHMKGVV+F NLG+ES     HL +F ++
Sbjct:  472 QLVPFFQFSEVEKISVDAVKNNFVAMKVDHMKGVVIFGNLGIESDGLRDHLAVFAES 528
The following BLAST results are available for this feature:
BLAST of DY258691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EIF3A_ARATH1.501e-1359.65Eukaryotic translation initiation factor 3 subunit... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3AB10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258691 ID=DY258691; Name=DY258691; organism=Citrus clementina; type=EST; length=1253bp
GCAGTTTTGTCCTATGAAGATCCAGCTGCTGCACATGCTGCTGGTGGTTT
TTTCCAAGATCATGAAATAAGAGGTTACAAAATCAGTGTGGTGATGGCAG
AGAAGACTGCACTGAAAACTGGTGGTGGTGGTGGCGGTGGTAGAGGGGGC
TATGGCAATGGTGGAGACAGGCGCAGGGATAATTATAGAGATGGTGGTGG
GCCAGATAGACATCAACATGGTGGAAACCGTTCGCGCCCATATTGAAAAA
TTTCTCTTTTTATGTACTAGAGAATTATGGTCTGAGAGTTTTTAATTGTG
TTACAATCGCGGGATTGTTCTTGAAATGGAGAGGAAAGAGGTAGGTTGTT
CACTTATTCAGGATAGACAATACCCCCTTTTTCTCCTTTCTCATTTATCT
ACCGCAACGTGGAGGGTAATCTATTCTAGGCGTGGGATTGATTAGTTGTG
AATGTTTTTATAGAGGCAAGTGGATAACCAAAATATCTTTGCAGCTATGG
TATGATATTTTCAGGTGAAATGATTCCTTTCTTTGATTTTGCTGTCGTGG
AGAAAATTTCTGTTGAAGCTGTGAAACATAATTTCATAGCTATGAAAATT
GACCATATGAAAGGTGTTGTAGTTTTTTGTAATTTGGGCCTTGAATCTGC
ACCTCCTTTGCATCACCTGACTATTTTTGTACAAAACTTTGTTTAAATTG
TTTTCCTTGACATATCCGTCCTGCAAATAAAGAATCAAATCTTTGTTTAC
CCGCCCGGCCTGCTCTCCGGGAGATGGGAAAAAAAGAACAGAAGAGGCTT
TCTTGCCCGAGAACCCCCCCCCCGGCAAAAAGACGAATGAATTTGAACAG
CAAAAAAAAAAAAATTGTAACGTGGATGAAAAAAACCCCCCCCGCAAAAA
CCAAAAAAAGATTTTTTATTTATTCCAAAGAACAAAAACTCCTTTTTTTT
TTATATAAAACCCCTTTGATAAGTGAAAAGAGAAAAAACAAAAAAACCAA
GCGCATGCCCGGAGAGGGAAAAAAAACTCCGTGTTGGTGGTTTGGAAACA
ACACACAAACCCCCACAAAAAAAAAAAAAAAAGAAAGTTTAATATCTCCC
CCCCCCCAAAAAAGAGGAAGTAAATAGAGGAGAAGAAAAAAAAACACCCC
GGGGGGGGGGGAGAGCGCCCCCCCCGGCGGCGGCGGGAAGAGAGGGAGGG
GGGAGCTAAATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTCTCAT
GAA
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