DY258767

Overview
NameDY258767
Unique NameDY258767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1238
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1230 contig Ccv1_Contig1230:1..1238. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258767 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 445.662 bits (1145), Expect = 2.695e-124
Identity = 244/357 (68.35%), Postives = 262/357 (73.39%), Query Frame = 3
Query:    6 SQPVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGAAIMHYAAKWLTGLIRXXXXXXXXXXXXXXXXXXXXXXX------------------WKGGLHMIVAGMKDDPPT----------VQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYS-KGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFS-DKHMYDASQRGNGTS----------AKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESXRTCDDGLYRAFDSYLKAHPTLSEHERKRLCPGMDCQKLSIDACMHAAQKERIPLKIVVQVLF 956
            SQPVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFEL+GA IMHYA KWL GLI+                                         WKGGLHM+++  K +             +  KDQRMI+ESLISIIPPQKDSV+CSFLLRLLR ANMLKVAPAL+TELEKRVGMQFEQATL DLLIP Y+ KGET+YDVDLVQRLLEHFLVQEQTE SSPSR S S  + MY    RGN  +          AKMRVARLVD YLTEVARDRNL LTKFQVLAEALPES RTCDDGLYRA DSYLKAHPTLSEHERKRLC  MDCQKLS+DACMHAAQ ER+PL++VVQVLF
Sbjct:  243 SQPVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELLGAVIMHYAGKWLPGLIKEGGVAIAPAMSSAIGGGLGLGGDEMSISCGSNSSGGSSGPDWKGGLHMVLSAGKTNGHQDSVACLAGLGISPKDQRMIVESLISIIPPQKDSVTCSFLLRLLRAANMLKVAPALITELEKRVGMQFEQATLQDLLIPGYNNKGETMYDVDLVQRLLEHFLVQEQTEGSSPSRMSPSPSQSMYADIPRGNNNNGGGGGGNNQNAKMRVARLVDSYLTEVARDRNLPLTKFQVLAEALPESARTCDDGLYRAIDSYLKAHPTLSEHERKRLCRVMDCQKLSMDACMHAAQNERLPLRVVVQVLF 599          
BLAST of DY258767 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 391.349 bits (1004), Expect = 6.032e-108
Identity = 217/344 (63.08%), Postives = 247/344 (71.80%), Query Frame = 3
Query:    9 QPVPP-DWWFEDVSILRIDHFVRVITAIKVKGMRFELIGAAIMHYAAKWLTGLIRXXXXXXXXXXXXXXXXXXXXXXXWKGGLHMIV----AGMKDD---PPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYS--KGETLYDVDLVQRLLEHFLVQEQTE---SSSPSR---------------QSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESXRTCDDGLYRAFDSYLKAHPTLSEHERKRLCPGMDCQKLSIDACMHAAQKERIPLKIVVQVLF 956
            Q VPP DWWFEDVS+LRIDHFVRV+TAIKVKGMRF+LIGAAI HYA+KWL GL +                         GGLHM++     G KDD     +  +++QRM++ES+ISI PPQ+DSVSC FLLRLLR+A ML+ APALVTELEKRVGMQ EQA LADLLIP+Y     +T YDVDLVQRL+EHFLVQEQTE   +SSP R                  S      AS    G +AK RVARL+D YL+EV+RDRNLSLTKFQVLAE+LPES R CDDGLYRA DSYLKAHPTL+EHERKRLC  MDCQKLS DACMHAAQ ER+PL++VVQVLF
Sbjct:  262 QAVPPADWWFEDVSVLRIDHFVRVVTAIKVKGMRFDLIGAAITHYASKWLPGLTKDAPLGATHDEPWAQASAAGVGG---GGLHMMIISGAGGGKDDVLAACSAPSREQRMVVESIISITPPQRDSVSCGFLLRLLRLAIMLRAAPALVTELEKRVGMQLEQAALADLLIPSYGGRAADTAYDVDLVQRLVEHFLVQEQTEMAVASSPGRGDPPPPPQPEYYSGRMPPSSAAAASASASTGGLNAKARVARLLDSYLSEVSRDRNLSLTKFQVLAESLPESARACDDGLYRAVDSYLKAHPTLTEHERKRLCRVMDCQKLSFDACMHAAQNERLPLRVVVQVLF 602          
BLAST of DY258767 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 2.570e-58
Identity = 133/325 (40.92%), Postives = 188/325 (57.85%), Query Frame = 3
Query:    3 RSQPVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGAAIMHYAAKWLTGLIRXXXXXXXXXXXXXXXXXXXXXXXWKGGLHMIVAGMKDDP----PTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKG-ETLYDVDLVQRLLEHFLVQEQTESSSPSR--QSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESXRTCDDGLYRAFDSYLKAHPTLSEHERKRLCPGMDCQKLSIDACMHAAQKERIPLKIVVQVLF 956
            R +    DWW+ED S+L    F R+IT ++ +G+R ++I  ++ +Y  K L GL R                        +GG     +G    P      +  ++Q+ ++E +  ++  QK  V   F + +LR+A +LK +P  +  LEKR+GMQ +QA L DL++P++S   ETLYDVD VQR+L+HFL  +Q           S  D ++  + Q     +A   VA+L+DGYL EVA D NL L KFQ LA ++PE  R  DDGLYRA D YLK HP L+E ER+ LC  +DCQKLS++AC HAAQ ER+PL+I+VQVLF
Sbjct:  207 RPKHTSSDWWYEDASMLSFPLFKRLITVMESRGIREDIIAGSLTYYTRKHLPGLKRR-----------------------RGGPES--SGRFSTPLGSGNVLSEEEQKNLLEEIQELLRMQKGLVPTKFFVDMLRIAKILKASPDCIANLEKRIGMQLDQAALEDLVMPSFSHTMETLYDVDSVQRILDHFLGTDQIMPGGVGSPCSSVDDGNLIGSPQSITPMTA---VAKLIDGYLAEVAPDVNLKLPKFQALAASIPEYARLLDDGLYRAIDIYLKHHPWLAETERENLCRLLDCQKLSLEACTHAAQNERLPLRIIVQVLF 503          
BLAST of DY258767 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 9.787e-50
Identity = 120/312 (38.46%), Postives = 178/312 (57.05%), Query Frame = 3
Query:   24 DWWFEDVSILRIDHFVRVITAIKVKGMRFELIGAAIMHYAAKWLTGLIRXXXXXXXXXXXXXXXXXXXXXXXWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSK-GETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESXRTCDDGLYRAFDSYLKAHPTLSEHERKRLCPGMDCQKLSIDACMHAAQKERIPLKIVVQVLF 956
            DWW ED+S+LRID + RV+ A+K +G+R E IGA+++ YA + LT                                              +++ ++ I+E++++++P +   V  SFL  LLR A +L  + +   +LE+R+G Q + ATL DLLIP++   G+TL+D+D V R+L +F  Q+  + S      F     +  SQ     +A  +VA+LVD YL E+A D NL L+KF ++AEALP   RT  DGLYRA D YLKAH  LS+ ++K+L   +D QKLS +A  HAAQ ER+PL+ +VQVL+
Sbjct:  219 DWWIEDLSVLRIDLYQRVMNAMKCRGVRPESIGASLVSYAERELTK---------------------------------------------RSEHEQTIVETIVTLLPVENLVVPISFLFGLLRRAVILDTSVSCRLDLERRLGSQLDMATLDDLLIPSFRHAGDTLFDIDTVHRILVNFS-QQGGDDSEDEESVFECDSPHSPSQ-----TAMFKVAKLVDSYLAEIAPDANLDLSKFLLIAEALPPHARTLHDGLYRAIDLYLKAHQGLSDSDKKKLSKLIDFQKLSQEAGAHAAQNERLPLQSIVQVLY 479          
BLAST of DY258767 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 2.582e-42
Identity = 105/314 (33.44%), Postives = 168/314 (53.50%), Query Frame = 3
Query:   18 PPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGAAIMHYAAKWLTGLIRXXXXXXXXXXXXXXXXXXXXXXXWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYS-KGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESXRTCDDGLYRAFDSYLKAHPTLSEHERKRLCPGMDCQKLSIDACMHAAQKERIPLKIVVQVLF 956
            PP+WW E++ IL +D F  V++++K +G++   + +AI+ Y  K L  L+R                          G+     G   D  + +   QR +++S++S++P  K     +FL  LLR A  L  +     ELEKR+ +  E  ++ DLLIP+++  GE L D+D V+R++  F+ +E+                     RG  + +  RVA+ VD YL E+A   +L+++KF  +A  +P+S R  DD LYRA D +LKAHP L E ER+++C  MD  KLS DA +HA+Q +R+P+ IV+  L+
Sbjct:  185 PPNWWTEELCILDVDFFSDVVSSMKQRGVKPSSLASAIITYTEKSLRDLVRDHSGR---------------------GVKYSDPG---DNESDERSQQRDLVQSIVSLLPSDKGLFPVNFLCSLLRCAVFLDTSLTCKNELEKRISVVLEHVSVDDLLIPSFTYDGERLLDLDSVRRIISAFVEKEKNVGVFNGGD----------FNRGVCSVSLQRVAKTVDSYLAEIATYGDLTISKFNAIANLVPKSARKSDDDLYRAIDIFLKAHPNLDEIEREKVCSSMDPLKLSYDARLHASQNKRLPVNIVLHALY 464          
The following BLAST results are available for this feature:
BLAST of DY258767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPT3_ARATH2.695e-12468.35Root phototropism protein 3 OS=Arabidopsis thalian... [more]
NPH3_ORYSJ6.032e-10863.08Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
Y1044_ARATH2.570e-5840.92BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
Y5880_ARATH9.787e-5038.46BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
RPT2_ARATH2.582e-4233.44Root phototropism protein 2 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3BE05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258767 ID=DY258767; Name=DY258767; organism=Citrus clementina; type=EST; length=1238bp
GCAGAAGTCAGCCAGTTCCTCCTGATTGGTGGTTTGAAGATGTTTCGATT
CTCAGGATTGATCACTTTGTTAGGGTCATTACAGCAATTAAAGTAAAGGG
TATGAGATTTGAGCTGATTGGAGCTGCAATAATGCATTATGCGGCAAAAT
GGCTTACGGGTTTGATAAGAGAAAGTTCAGGGTCAGCAGATGAAATAAGC
AGCTGTAGTGCTAGCAATAGTAATGGTAGTTGTAGTAGTTGGAAAGGTGG
ACTTCATATGATCGTGGCAGGGATGAAGGATGATCCTCCAACCGTTCAGG
CTAAAGATCAACGGATGATAATCGAGAGCCTTATCAGCATAATTCCACCA
CAGAAAGACAGTGTGTCATGTAGCTTCCTTCTTAGGCTCTTGAGAATGGC
AAACATGTTAAAAGTAGCACCTGCTTTGGTGACTGAATTGGAGAAACGAG
TGGGGATGCAGTTTGAGCAAGCTACATTGGCAGATCTTCTCATTCCTGCT
TACAGTAAAGGTGAAACTCTATATGATGTGGATCTTGTTCAGAGGCTTTT
GGAGCATTTTCTTGTTCAGGAGCAGACCGAAAGTTCGAGTCCTAGTAGGC
AATCTTTTTCAGATAAACACATGTATGACGCAAGTCAAAGGGGAAATGGC
ACAAGTGCTAAGATGAGAGTGGCAAGGCTTGTTGATGGTTATCTTACAGA
AGTGGCCAGAGATAGAAACCTGTCTTTGACGAAATTTCAGGTGTTGGCAG
AGGCTTTACCTGAATCTGNCAGAACCTGTGATGATGGACTTTATCGAGCA
TTTGACTCTTACCTTAAGGCCCATCCAACGCTATCCGAGCATGAAAGGAA
ACGTCTCTGCCCTGGGATGGATTGCCAGAAACTGTCCATTGATGCTTGCA
TGCATGCCGCACAAAAGGAAAGAATACCCCTAAAGATTGTAGTTCAGGTC
CTTTTTCTCTAAACAAAATAAAAAATAACCATGGCTTAGGGCCAACAACC
ACCCCGGAAAGAAACCTGGGAAAAAAGTCAAAAACCAGCCCAATGGAATT
ACAAACAAAAAAATCTTCTTCTTTTAAAGCCCAACCCCCCGCCCCTTTTT
CCCAAAAAGGAAGGGGGGCAACTGGGCCTAAAAAAAGGGAAAATTTAACC
CCCCCCCCCCAAAAATTTTTTAAACCATAAAAAAGAGAGGTGGTCTAGGG
GGCGGCTTATAAAATATATTCTTTCTTTGGTTAAAAAA
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