gene-KPL71_018601-mRNA1 | Citrus Genome Database

Transcript Overview


Name	gene-KPL71_018601-mRNA1
Unique Name	gene-KPL71_018601-mRNA1_Citrus_sinensis_DVS_B_v1
Type	mRNA
Organism	Citrus sinensis (Sweet orange)
Sequence length	5958
Product	E3 ubiquitin-protein ligase PUB24

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus sinensis cv. Valencia DVS_B genome v1.0	2023-04-13
BLAST: C. sinensis DVS_B v1.0	2023-04-17
InterPro: C. sinensis DVS_B v1.0	2023-04-17

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caudvbL154	Citrus australis genome v1.0 (UQ)	Citrus australis
ccdvbL100	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cledvbL085	Citrus limon cv. Eureka genome v1.0	Citrus limon
cledvbL113	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmdvbL262	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
csdvbL117	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
dvadvbL304	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
dvbswoR196	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
dvbfhR439	Fortunella hindsii genome v1.0	Fortunella hindsii
dvbfhR471	Fortunella hindsii genome v1.0	Fortunella hindsii
dvbzkR336	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
csidvbL352	Citrus sinensis Valencia genome v1.0 (HZAU)	Citrus sinensis
dvbswR287	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
cmjdvbL215	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
dvbfhsR384	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
csndvbL314	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
csndvbL337	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
dvbminR584	Citrus inodora CRC3784 genome v1.0	Citrus inodora
dvbminR610	Citrus inodora CRC3784 genome v1.0	Citrus inodora
dvbeglR0935	Citrus glauca CRC3463 genome v1	Citrus glauca
dvbeglR0999	Citrus glauca CRC3463 genome v1	Citrus glauca
ccrdvbL136	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrdvbL325	Citrus australasica CRC3672 genome v1	Citrus australasica
csgdvbL056	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
abhdvbL178	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
cizdvbL101	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
clldvbL195	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cmxdvbL287	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmmdvbL135	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
cmmdvbL321	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caadvbL349	Citrus australasica cv. AZM genome v1.0	Citrus australasica
chhdvbL307	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
dvbmpkR278	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
clhdvbL215	Clausena lansium cv. HP genome v1.0	Clausena lansium
dvbmpjR264	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
aeadvbL031	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
cigdvbL248	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cmhdvbL165	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmhdvbL208	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
dvblssR296	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
clxdvbL268	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
csjdvbL252	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
csjdvbL516	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
dvbneiR285	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cradvbL240	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cradvbL401	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cchdvbL194	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
cchdvbL231	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
ciudvbL172	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciudvbL390	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgadvbL189	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgadvbL409	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgudvbL168	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgudvbL362	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cumdvbL000	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
crcdvbL318	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cstdvbL221	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
crmdvbL242	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
crmdvbL405	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cridvbL198	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cridvbL420	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Orthologs


Gene/Transcript	Assembly	Species
sjg211400.1	Fortunella hindsii genome v1.0	Fortunella hindsii

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-KPL71_018601	gene-KPL71_018601_Citrus_sinensis_DVS_B_v1	Citrus sinensis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-gnl\|WGS:JAHMIT\|DVS6B01498.t01-exon1	rna-gnl\|WGS:JAHMIT\|DVS6B01498.t01-exon1_Citrus_sinensis_DVS_B_v1	Citrus sinensis	exon
rna-gnl\|WGS:JAHMIT\|DVS6B01498.t01-exon2	rna-gnl\|WGS:JAHMIT\|DVS6B01498.t01-exon2_Citrus_sinensis_DVS_B_v1	Citrus sinensis	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-gnl\|WGS:JAHMIT\|DVS6B01498.t01-CDS1	rna-gnl\|WGS:JAHMIT\|DVS6B01498.t01-CDS1_Citrus_sinensis_DVS_B_v1	Citrus sinensis	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
gene-KPL71_018601-mRNA1_Citrus_sinensis_DVS_B_v1	gene-KPL71_018601-mRNA1_Citrus_sinensis_DVS_B_v1	Citrus sinensis	polypeptide
gene-KPL71_018601-mRNA1_Citrus_sinensis_DVS_B_v1	gene-KPL71_018601-mRNA1_Citrus_sinensis_DVS_B_v1-protein	Citrus sinensis	polypeptide

Homology

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BLAST of gene-KPL71_018601-mRNA1 vs. DB:SwissProt
Match: PUB24_ARATH (E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 3.934e-116
Identity = 207/457 (45.30%), Postives = 285/457 (62.36%), Query Frame = 2

Query: 2942 HQDIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNSAYGIDRIPTPKAPLSKLQIIKLIKDLWKPELQT----KTLIRLEVFAAENERNRKCMAEAGVPRALLTYIVKCCDKNQVG-----GLEGALIILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKE---IKSHALRILKNIIQAASSKFLQRLKPQFFQNIIRVLKQRV----------------------------------IAQQGVNAALQLMLDACPSGRNRMMMVESGAVFELIELELT-ASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNFNFVVQEMLRVGTVSKLCSFLQVDCAAYLKDKAREILRSHYDEWKDSPCIDASVLSRLI 4171
             ++IEIP YFICPISL+IMKDPVT ++GITYDR++I  WL        CPVTKQPLP D DLTPNH LRRLIQ WC +N   G+ RI TP+ P  KL +++ IK+L K   +     +TL +LEV A +   NR+ M E GV ++L+ ++VKC  +++ G     GL+ +L +LH   I S   K    E D+++ES TWVL         H+E    K++ + +L+N+ +  SS  ++RL P+ F+ II  LK  V                                  + +Q V AAL ++L+     RNR ++V+ GAV ELIELE++   EK+ TEL+LG+L  LC CA+GRA+ L+HR  IAVVTKR+++VSPAADDRAI IL+ + KFS   N VV+EM+ VGTV KLCS L +DC   LK+KA+EIL+ H+DEWK  PCID ++L++L+
Sbjct:    5 EEEIEIPNYFICPISLEIMKDPVTTVSGITYDRQNIVKWL---EKVPSCPVTKQPLPLDSDLTPNHMLRRLIQHWCVENETRGVVRISTPRVPPGKLNVVEEIKNLKKFGQEALGREETLQKLEVLAMDG-NNRRLMCECGVHKSLILFVVKCTSEDEDGRRRIKGLDESLRLLHLIGIPSNDAKTILMENDRVMESLTWVL---------HQEDFLSKAYTIVLLRNLTEYTSSHIVERLNPEIFKGIIGFLKDVVNSVNRTSPTVRETVQSSSRPSLGKTEPSKLDHSLVIKQAVTAALMILLETSSWSRNRSLLVDLGAVSELIELEISYTGEKRITELMLGVLSRLCCCANGRAEILAHRGGIAVVTKRLLRVSPAADDRAISILTTVSKFSPE-NMVVEEMVNVGTVEKLCSVLGMDCGLNLKEKAKEILKDHFDEWKKFPCIDITLLTKLL 447

[Close]

BLAST of gene-KPL71_018601-mRNA1 vs. DB:SwissProt
Match: PUB23_ARATH (E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 9.903e-96
Identity = 178/412 (43.20%), Postives = 260/412 (63.11%), Query Frame = 2

Query: 2945 QDIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNSAYGIDRIPTPKAPLSKLQIIKLIKDLWKP-ELQTKTLIRLEVFAAENERNRKCMAEAGVPRALLTYIVKCCDKNQVGGLEGALIILHFFKITSEYM---KLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQFFQNIIRVLKQRVIAQQGVNAALQLMLDACPSGRNRMMMVESGAVFELIEL---ELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNFNFVVQEMLRVGTVSKLCSFLQVDCAAYLKDKAREILRSHYDEWKDSPCIDASVL 4159
            ++IEIP +F+CPISL+IMKDPV   TGITYDR+SIE WLF G  N+ CPVTKQ +  D DLTPNHTLRRLIQ+WC  N++YG++RIPTP+ P+ K +I KLI+D     E Q K L RL    +EN  N++C+  AGVP  L   +    + ++ G L    + L +   TSE +    L+  + + IV+S T ++           E + +A  +LKNI++ A       LKP+ F  ++++L  R I+Q+   AA+ ++++ CP GRNR   VE+G +  +IEL   E   SE++  E+ + +L  LC CA+GRA+FL+H AAIAVV K+I++VS  A DRA+ +L  + +F      ++ EML++G V+KLC  LQV C    K+KA+E+L+ H   WKDSPC+  +++
Sbjct:    8 EEIEIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNS-CPVTKQDI-TDADLTPNHTLRRLIQSWCTLNASYGVERIPTPRPPICKSEIEKLIRDSASSHENQVKCLKRLRQIVSENATNKRCLEAAGVPEFLANIV---SNDSENGSLTDEALNLLYHLETSETVLKNLLNNKKDNNIVKSLTKIMQ------RGMYESRVYATLLLKNILEVADPMQSMTLKPEVFTEVVQILDDR-ISQKATKAAMHILVNICPWGRNRHKAVEAGVISVIIELLMDESFTSERRGPEMAMVVLDLLCQCAEGRAEFLNHGAAIAVVCKKILRVSQTASDRAVRVLLSVGRFCAT-PALLHEMLQLGVVAKLCLVLQVSCGGKTKEKAKELLKLHARVWKDSPCLPKNMI 406

[Close]

BLAST of gene-KPL71_018601-mRNA1 vs. DB:SwissProt
Match: PUB22_ARATH (E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.553e-84
Identity = 169/433 (39.03%), Postives = 256/433 (59.12%), Query Frame = 2

Query: 2945 QDIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNSAYGIDRIPTPKAPLSKLQIIKLIKDLWKPEL-QTKTLIRLEVFAAENERNRKCMAEAGVPRALLTYIVKC-------------------CDKNQVGG--------LEGALIILHFFKITSEYMK--LSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQFFQNIIRVLKQRVIAQQGVNAALQLMLDACPSGRNRMMMVESGAVFELIEL---ELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNFNFVVQEMLRVGTVSKLCSFLQVDCAAYLKDKAREILRSHYDEWKDSPCI 4144
            Q+IEIP +F+CPISL IMKDPV   TGITYDRESIE WLF G  N+ CPVTKQ +  + DLTPNHTLRRLIQ+WC  N++YGI+RIPTPK P+ K +I KLIK+     L Q K L RL    +EN  N++C+  A VP  L   +                      C  N +          ++ AL +L+    +   +K  L+  +   +V++ T ++           E +++A  +LK +++ A    +  L+ + F  +I++L  + I+ +   +A+Q+++  CP GRNR   VE G +  +IEL   +  +SE++ +E+ + +L  LC CA+GRA+FL+H AAIAVV+K+I++VS    +RA+ +L  + +F    +  +QEML++G V+KLC  LQV C    K+KA+E+L+ H   W++SPC+
Sbjct:    3 QEIEIPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNS-CPVTKQVI-TETDLTPNHTLRRLIQSWCTLNASYGIERIPTPKPPICKSEIEKLIKESSSSHLNQVKCLKRLRQIVSENTTNKRCLEAAEVPEFLANIVSNSVDTYNSPSSSLSSSNLNDMCQSNMLENRFDSSRSLMDEALSVLYHLDTSETALKSLLNNKKGTNLVKTLTKIMQ------RGIYESRAYAALLLKKLLEVADPMQIILLERELFGEVIQILHDQ-ISHKATRSAMQILVITCPWGRNRHKAVEGGTISMIIELLMDDTFSSERRNSEMAMVVLDMLCQCAEGRAEFLNHGAAIAVVSKKILRVSQITSERAVRVLLSVGRFCATPSL-LQEMLQLGVVAKLCLVLQVSCGNKTKEKAKELLKLHARVWRESPCV 425

[Close]

BLAST of gene-KPL71_018601-mRNA1 vs. DB:SwissProt
Match: PUB25_ARATH (U-box domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=PUB25 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.312e-40
Identity = 122/402 (30.35%), Postives = 192/402 (47.76%), Query Frame = 2

Query: 2951 IEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNSAYGIDRIPTPKAPLSKLQIIKLIKDLW-------KPELQTKTLIRLEVFAAENERNRKCMAEAGVPRALLTYIVKCCDKNQVGGLEGALIILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHAL-RILKNIIQAASSKFLQRLKPQFFQNIIRVLKQRVIAQQGVNAALQLMLDACPSGRNRMMMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNFNFVVQEMLRVGTVSKLCSFLQVDCAAYLKDKAREILRSHYDEWKD 4132
            I+IP +F CPISL++M+DPVT  TG TYDR SIE W+  GNN   CPVT+ PL  D  L PNHTLRRLIQ WC  N + G++RIPTPK P     +  L+               +   L RL  FA ++++NR  +A       L+  +      +++  +  +L +L    IT     +S       VE  T +L   D SIE    + + AL  I+    ++A  K         F+ ++ +L+  + +++ +   ++ +   C     R + + +GA   LI+      ++  TE  L  +  LC   +G A F  H   + ++ K I++VS  A + A   L  +C     +    +E    G V +L   +Q +C    K KA+++L+   D W D
Sbjct:   12 IQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTT-CPVTRAPL-SDFTLIPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPTSVRALLSQASAITGTHVSVRSRAAALRRLRGFARDSDKNRVLIAAHNATEILIKILFSETTSSEL--VSESLALLVMLPITEPNQFVSISSDPGRVEFLTRLLF--DSSIETR--VNAAALIEIVSTGTKSADLKGSISNSESVFEGVLDLLRNPISSRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRLAADFDRCDTERALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALCTAEERWR---EEAAGAGVVVQLLLMVQSECTERAKKKAQKLLKLLRDSWPD 402

[Close]

BLAST of gene-KPL71_018601-mRNA1 vs. DB:SwissProt
Match: PUB20_ARATH (U-box domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=PUB20 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.095e-38
Identity = 124/429 (28.90%), Postives = 197/429 (45.92%), Query Frame = 2

Query: 2948 DIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNSAYGIDRIPTPKAPLSKLQIIKLIKDLWKPELQ------TKTLIRLEVFAAENERNRKCMAEAGVPRALLTYIVKCCDKNQVGGLEGALIILHFFKITSEYMKLSAFEIDKIVESFTWVL--ALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQFFQNIIRVLKQRVIAQQGVNAALQLMLDACPSGRN------RMMMVESGAVFELIELELTA--------SEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNFNFVVQEMLRVGTVSKLCSFLQVDCAAYLKDKAREILRSHYDEWKDSPCIDASVLSRL 4168
            +I IP  F CPIS ++MKDPV   +GITYDRE+IE W   G     CPVT   L   L+  PNHT+RR+IQ WC  +   GI+RIPTP+ P++  Q+ ++ + L     +       + + ++     E+ERNRKC+ E G                        L++   F   SE    S   +++ V   TW+L   L+ +S        +  + +L+N  Q A+  FL  +K     N+  V    +    GV  A    ++   +  N       M++     V   +EL+L          SE    E  L +L  +C   +GR +   ++  I ++ K+I+++S   D   + ++  +CK SG+ +  V+E LR+G   KL   LQV C    K+K  E+L+      K +  +D S  S +
Sbjct:   30 EITIPSQFQCPISYELMKDPVIIASGITYDRENIEKWFESGYQT--CPVTNTVLT-SLEQIPNHTIRRMIQGWCGSSLGGGIERIPTPRVPVTSHQVSEICERLSAATRRGDYAACMEMVTKMTRLGKESERNRKCVKENG----------------------AGLVLCVCFDAFSENANASLL-LEETVSVLTWMLPIGLEGQSKLTTTSSFNRLVELLRNGDQNAA--FL--IKELLELNVTHV--HALTKINGVQEAFMKSINRDSTCVNSLISIHHMILTNQETVSRFLELDLVNITVEMLVDSENSVCEKALTVLNVICETKEGREKVRRNKLVIPILVKKILKISEKKD--LVSVMWKVCK-SGDGSE-VEEALRLGAFKKLVVMLQVGCGEGTKEKVTELLKMMNKVMKMNGFVDRSYSSSI 422

[Close]

BLAST of gene-KPL71_018601-mRNA1 vs. DB:SwissProt
Match: PUB26_ARATH (U-box domain-containing protein 26 OS=Arabidopsis thaliana OX=3702 GN=PUB26 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.862e-36
Identity = 122/420 (29.05%), Postives = 194/420 (46.19%), Query Frame = 2

Query: 2951 IEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNSAYGIDRIPTPKAPLSKLQIIKLIKD---LWKPELQTKT----LIRLEVFAAENERNRKCMAEAGVPRALLTYIVKCCDKN-----QVGGLEGALIILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASS---KFLQRLKPQFFQNIIRVLKQRVIAQQGVNAALQLMLDACPSGRNRMMMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNFNFVVQEMLRVGTVSKLCSFLQVDCAAYLKDKAREILRSHYDEWKDSPCIDASVLSR 4165
            I+IP +F CPISL +M DPVT  TG TYDR SI+ W+  GN    CPVT+  L  D  L PNHTLRRLIQ WC  N + G++RIPTPK P   + +  L+     +    +  ++    + RL   A ++E+NR  +A       L+  +    +        V      L++LH  +   E     A   D     F   L L D SI    EI+ +A  +++ ++  A S   K +       F+ ++ +LK  + +++ +   ++ +   C   + R + + +GA   LI+      ++  TE  L  +  LC   +G A F  H   + ++ K I++VS  A + A   L  +C           E    G V++L   +Q DC    K KA+ +L+   D W D   + +   +R
Sbjct:   12 IQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTT--CPVTRVAL-SDFTLIPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPISVRSLLSQASAITGTHVSVRSRAAAIRRLRGLARDSEKNRVLIAGHNAREILVRILFADIETTSLSSELVSESLALLVLLHMTETECE-----AVASDPSRVGFMTRL-LFDSSI----EIRVNAAALIEMVLTGAKSMDLKLIISGSDSIFEGVLDLLKNPISSRRALKIGIKAIFALCLVKQTRHLAISAGAPGILIDRLAADFDRCDTERGLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDRATEYAAGALLALCTAEERCR---DEAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPDDSTVHSDDFNR 415

[Close]

BLAST of gene-KPL71_018601-mRNA1 vs. DB:SwissProt
Match: PUB21_ARATH (U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.508e-32
Identity = 122/431 (28.31%), Postives = 198/431 (45.94%), Query Frame = 2

Query: 2942 HQDIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNSAYGIDRIPTPKAPLSKLQIIKLIKDLWKPELQTK------TLIRLEVFAAENERNRKCMAEAGVPRALLTYIVKCCDKNQVGGLEGALIILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQFFQNIIRVLKQRV---IAQQGVNAAL-QLMLDACPSGRN--------RMMMVESGAVFELIELELTA--------SEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNFNFV-VQEMLRVGTVSKLCSFLQVDCAAYLKDKAREILRSHYDEWK-DSPCIDA 4150
              +I IP  F CPIS+ +MKDPV   TGITYDR SIE W+  GN    CPVT   L    D  PNHT+R++IQ WC +  +  I RIPTP+ PL   ++ ++ + L     +         + +++    E+E+NRKC+ E  V   L      C DK    G E         K+T        F +++I+   TW+  +  E I   K   + + R +  ++++      Q       + I+ + + RV     + GV  AL +L+ D+  S           +M++ +     E +E+ L +        +E    E  L +L  +C    GR +   +   + ++ K+I +VS  A   +   +S+I K     N V V++ +R+G   K+   LQV      K+KA E+L+    + K  S C+D+
Sbjct:   26 ESEITIPPEFQCPISIDLMKDPVIISTGITYDRVSIETWINSGNKT--CPVTNTVL-TTFDQIPNHTIRKMIQGWCVEKGSPLIQRIPTPRVPLMPCEVYEISRKLSSATRRGDYEKCGVIIEKIKKLGDESEKNRKCVNENSVGWVL----CDCFDK--FSGDE---------KLT--------FMLNEILSLLTWMFPIGLEGI--SKLASATSFRCVAGLLKSTDDSVRQN-AAFIMKEILSLDETRVHSFAVENGVAEALVKLIRDSVSSSSTKSSLIAIYQMVLQKPEIASEFLEIGLVSITVEMIVDAENSVCEKALAVLDAICETEHGREEVRKNALVMPLLVKKIAKVSELATRSS---MSMILKLWKTGNTVAVEDAVRLGAFQKVLLVLQVGYGEETKEKATELLKMMNTQMKLMSDCVDS 424

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BLAST of gene-KPL71_018601-mRNA1 vs. DB:SwissProt
Match: PUB29_ARATH (U-box domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=PUB29 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.381e-24
Identity = 104/399 (26.07%), Postives = 190/399 (47.62%), Query Frame = 2

Query: 2951 IEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCAD-----NSAYGIDRIPTPKAPLSKLQIIKLIKDLWKPELQTKTLIRLEVFAAENERNRKCMAEAGVPRALLTYIVKCCDKNQVGGLEGALIILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQFFQNIIRVLKQRVIAQQG----VNAALQLMLDACPSGRNRMMMVESGAVFELIELELTA--SEKKTTELILGILFHLCSCADGRAQFLSHRAAIAV--VTKRIMQVSPAADDRAILILSLICKFSGNFNFVVQEMLRVGTVSKLCSFLQVDCAAYLKDKAREILR 4108
            I +P +F CPISL +M+ PV+  TG+TYDR SI+ WL  GNN   CP T Q L K  D  PN TL+RLI  W        N    +   P+ +   +K ++  L++ L   E     L+++  F  +++ NR+ +++      +L  I++   K ++  +  A+ IL   K+  E +       D        +LA+   ++E+    K  ++R+L  I   A SK +   +      +++ +    I +      + A+L  ++    S R R  ++ + A+ ++ ++ LT   +    TE  L +L  L S  +GR +         V  V K++++VS  A + A+ IL  +C        V + + R   V+KL   +Q +C+A ++  A+++++
Sbjct:   10 ITVPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNT--CPATMQ-LLKTKDFVPNLTLQRLINIWSDSIGRRHNGDSPVLNPPSGREVPTKEEVNVLLERLMSLE----NLMKIVRFVKDSDSNREFLSKKMEFVPMLVDIIR-TKKTKIELVIMAIRILDSIKVDRERLSNLMLANDGGDCLTAILLAIQRGNLES----KIESVRVLDWISFDAKSKLMIAERDGVLTEMMKSIS---ITESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKDILLTETLTNVAVTEKSLKLLETLSSKREGRLEICGDDNGRCVEGVVKKLLKVSTTATEHAVTILWCLCYVFREDKTVEETVERSNGVTKLLVVIQSNCSAMVRQMAKDLIK 393

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BLAST of gene-KPL71_018601-mRNA1 vs. DB:SwissProt
Match: PUB30_ARATH (U-box domain-containing protein 30 OS=Arabidopsis thaliana OX=3702 GN=PUB30 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.076e-22
Identity = 106/407 (26.04%), Postives = 190/407 (46.68%), Query Frame = 2

Query: 2954 EIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNSAYGIDRIPTPKAPLSKLQIIKLIKDLWKPELQTKTLIRLEVFAAENERNRKCMAEAGVPRALLTYIVKCCDKNQVGGLEGALIILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQFFQNIIRVLKQRVIAQQGVNAALQLMLDACPSGRNRMMMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNFNFVVQEMLRVGTVSKLCSFLQVDCAAYLKDKAREILRSHYDEWKDSPCIDASVLSRLIR 4174
            +IP  FICPISL+ M+DPVT  TG TY+R +I  W   G  +  CP T Q L  D  +TPN TL  LI  W +    Y + +  +       ++I+  +K   K + +   L  L+     +   RK + E G   ++++ ++     + VG    A+++       S+   +   ++  IV+       L+D S     E K +  R+++ +++    +            ++R++K +   + GV+ AL+L+       + R +MV  GAV +L+++ L + + +  EL L +L  LC+  +GR         I    + +M+VS    + A+ IL  +CK +      +   + VG  +KL   +Q  C A LK ++ E+L+     + D+  I    L+R I+
Sbjct:   63 DIPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLG--HLTCPTTMQELWDD-TVTPNKTLHHLIYTWFSQK--YVLMKKRSEDVQGRAIEILGTLKKA-KGQARVHALSELKQIVIAHLMARKTVVEEG-GVSVISSLLGPFTSHAVGSEVVAILVSLDLDSDSKSGLMQPAKVSLIVD------MLNDGS----NETKINCARLIRGLVEEKGFRAELVSSHSLLVGLMRLVKDKR-HRNGVSPALRLLKPISVHKQVRSLMVSIGAVPQLVDI-LPSLDPECLELALFVLDALCTDVEGRVAVKDSANTIPYTVRVLMRVSENCTNYALSILWSVCKLAPEECSPLA--VEVGLAAKLLLVIQSGCDAALKQRSAELLKLCSLHYSDTMFISKCKLTRTIQ 448

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BLAST of gene-KPL71_018601-mRNA1 vs. DB:SwissProt
Match: PUB75_ORYSJ (U-box domain-containing protein 75 OS=Oryza sativa subsp. japonica OX=39947 GN=TUD1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.011e-20
Identity = 112/399 (28.07%), Postives = 177/399 (44.36%), Query Frame = 2

Query: 2936 DGHQDIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCA-------DNSAYGIDRIPTPKAPLSKLQIIKLIKDLWKPELQTKTLIRLEVFAAENERNRKCMAEAGVPRALLTYIVKCCDKNQVGGLEGALIILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQFFQNIIRVLKQRVIAQQGVNAALQLMLDACPSGR-NRMMMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNFNFVVQEMLRVGTVSKLCSFLQVDCAAYLKDKAREILR 4108
            DG  D  +P  FICPISL+ M DPVT  TG TY+  +I  WL  G+    CP T Q L  D+   PN TLR+LI AW +         SA    R       L    + K  +   K + +   L  L   AA ++   K +AEAG    LLT ++     + VG  E   I++    + ++  K +  +  K       V  L D   E   + K + +R+++ +++    +            ++R+++ +     GV A L+L+   C   +  R ++V  GAV +L+EL L     +  E  L IL  L +  +GR         I    + +M+VS A   RA+ +L ++C+ +          L  G  +KL   +Q  C   LK +A E+L+
Sbjct:   58 DGGGDEAVPAVFICPISLEPMVDPVTLCTGQTYESANISRWLALGHRT--CPTTMQEL-WDVTPIPNTTLRQLIAAWFSRRYTRFKKRSADFHGRAAELVHALRGTAVPK--RQPLKGQARVAALRELRSLAAAHQSVTKAIAEAG-GVGLLTSLLGPFTSHAVGS-EAVAILVSGVPLDADA-KAALMQPAK-------VSLLVDMLNEGAVDTKINCVRLIRILMEEKGFRPDTVASLSLLVGVMRLVRDKR-HPDGVAAGLELLNSICAVHKPARSLIVSIGAVPQLVEL-LPELPTECVEPALDILDALAAVPEGRIALKDCPRTITNAVRLLMRVSEACTRRALSMLWVVCRMA--PEECAPAALDAGLGAKLLLVIQSGCGPELKQQASELLK 437

The following BLAST results are available for this feature:

BLAST of gene-KPL71_018601-mRNA1 vs. DB:SwissProt

BLAST of gene-KPL71_018601-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
PUB24_ARATH	3.934e-116	45.30	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis t...	[more]
PUB23_ARATH	9.903e-96	43.20	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis t...	[more]
PUB22_ARATH	1.553e-84	39.03	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis t...	[more]
PUB25_ARATH	7.312e-40	30.35	U-box domain-containing protein 25 OS=Arabidopsis ...	[more]
PUB20_ARATH	4.095e-38	28.90	U-box domain-containing protein 20 OS=Arabidopsis ...	[more]
PUB26_ARATH	4.862e-36	29.05	U-box domain-containing protein 26 OS=Arabidopsis ...	[more]
PUB21_ARATH	5.508e-32	28.31	U-box domain-containing protein 21 OS=Arabidopsis ...	[more]
PUB29_ARATH	8.381e-24	26.07	U-box domain-containing protein 29 OS=Arabidopsis ...	[more]
PUB30_ARATH	5.076e-22	26.04	U-box domain-containing protein 30 OS=Arabidopsis ...	[more]
PUB75_ORYSJ	1.011e-20	28.07	U-box domain-containing protein 75 OS=Oryza sativa...	[more]

InterPro

Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 2..82 e-value: 2.3E-29 score: 103.0
IPR003613	U-box domain	PFAM	PF04564	U-box	coord: 9..83 e-value: 5.0E-19 score: 68.2
IPR003613	U-box domain	PROSITE	PS51698	U_BOX	coord: 8..85 score: 36.180679
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 100..405 e-value: 2.4E-11 score: 45.0
IPR045185	E3 ubiquitin-protein ligase PUB22/23/24-like	PANTHER	PTHR22849	WDSAM1 PROTEIN	coord: 5..405
IPR045210	PUB protein, U-box domain, plant	CDD	cd16664	RING-Ubox_PUB	coord: 10..59 e-value: 5.60286E-24 score: 91.8556
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 7..89
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 102..379

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM039175.1_Chr6_DVS_B:19593570..19599599-
coding sequence from alignment at CM039175.1_Chr6_DVS_B:19593570..19599599-

mRNA sequence

>gene-KPL71_018601-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018601-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018601-mRNA1; organism=Citrus sinensis; type=mRNA; length=5958bp
AACCTTAATTAAGTGGGTCACTCTATGATgttgttataaaaattacagca
tcaatattgatataaatatgcattgttagatttaattaacaattcacaaa
attaatagtgttttttaaagattaaataataaaaaagaaacaagtatatt
ttctattaaaacttctatattttcttttaaaaaatatgtattttaatatt
aacacAACTCAATCTTAGTTTATCCTCTTATTATTATCTCTTTTTCgaca
aaattatattgttccaattataaataacaaaaggaCCCATATTAACATGT
GTTGTCGAAGATTGAATAATccatatttgttatttacacATATAAGTTAA
TTTGTCtatttgcatatttaatttttaattttgttgatgatttagaaaat
atttgtcaaattataaaaaataaaatattgtccaTTAACTTGAATattat
ctattaatttttaagtaattagttatttatgcactaaattaaatcaatgg
tgaagataaaaacatataaatttagaGGTTCATAATGATCTTATTATGAG
CAGGGTAAAAATTCATGCagcatcataaaaaaaatcctaactaTGTATTA
AAAAGTAAGTTATCTAAACATCAGGATAACAATGTTCCACAAGTTATAAC
AAAATCTAGGGGTGTTCGTGGATCGGATTTTGCGagacatcaatccatat
ccgatccatgattttgcacttataaatttttaatctaatcgAATCCACAG
ATTGgtgaaattcaatccaaatccaatctatatatatgtggatcggatgc
ggatttgaaTCAATGCATGTCCAATTCACCATTTTGCGGATTGGTTTACg
agctaaaaatttttaattatgttctaTCCACGAActagcaaaataaaaaa
attaatataaaaataattttactaccgatcaaattcaaaattaaataaga
tttaaataaataaattgtttaaataaaggtagaaaatacatttaaagttt
caaaatataacacaaaaaaaaatctcatttgtttagatcaatacatgaaa
attaaatgattaggaagatatatttttttatttaattatttttattttat
attattattggataagatataatatggtattaatataactatattttaac
ttatttatttatttattaATTTTTGCGgatttacaaaagtaaatccatat
ctaATCCACCGACtgaagatttttaaattttcaatccaatccaatccatc
aATTCACGGATTGGATTTTTACAAATTAGATTTCTATGGATCAAATGGAT
TGAgcagattagattagattctAAACACCCCTAACAAAATATGAGAAAAC
GCCATTGCTAATTAGCACTTGTACTATTGTACgctctaaaatttaaattt
gtacctataaaattaaaaattaaaaattaaaaattaaaaattgaagaaat
catttCTCAAAAACTGAGCATGCGTGTACAGAAATTAATCTGATCAAGTA
GTAATATTATCTGGTCAATTTTATGTACCAGTAAACCCAGCAGCTGACTC
AACCTTTTTGACCTCATGAATAAATGTGCCCCGGACGACTTTGAGTCGCT
TTTCAATTATTGACTTGTTGCAATGCACTCGCATGTATCACGTTACGTTA
TCTAGGTCTGGATTAATTCATCATCCAATATTTCCATACAGTGCtgatta
aattgattgggTATACATGCTCTTATCTTTTCATTAGCCCAGTAAATGGG
CTCAAAGAAGTTCAAATTTGAAACCGATACGTTCATTAACTTGTTGGTGC
AACTCATATCCAATTTCACAAGtcttaaaatacatttttatatctaCAAA
TGCATGCACATGCAAGGTGAATTGATTAGTCAAAGGAATACGAATGAGGA
ACGTATTTGAATTGAGCTGCACACAATGCGCACATTAAGATTGGTCCATA
TTCGGAGATCAtaccctttttattttaattttgaatattatattatgaat
tttattgattatatgatttattgTGACCTACCTTAATGCTGCTCGTTTAA
TGTTCAACCTAAAAATTTACTTTGTAAAAGTAGAAACTTACTCTAGAAgc
ataagaaatttttattaaaatttcttatgcTACACGTGCAAAGAATCGAA
CTCACCgaagttttataatataaaagcCTTATAAATTAGGAGCAAGTGTT
AATTATTCAAGATGGccaattttagataaaaaagaaCCATTATTTGAATC
GccagtgttttttttttaaatggaaaacttcaattaaaaacttaaagtAA
AAGACTTGTTTGAATTGGAATTTCCTCCAACCAAATCACACTAACAGCAT
ATTTAGCTAATCAccacttttgttttgttgaaatttttatgcCATTGATG
CAAATGCAAGTAAATAAACAGTTTTATACGCgcaaattaatttgaatgca
agctgttttaattttcaataaagttaataacaataataataaacaaaaaa
ggaaacagaaaAAAGCTGCATGAATTGGCAATTACGTGTAACTTTGGATA
GAGCCAAAGCCAATCGGCCCTCACTTTTTTCTAACTTTGACCGCCGAACT
CcattagaataatataaaaatatattcatttaattcagTTTAAATTAAAT
GTCACAGAGAATTTACGACTAGTAAGCTATGACcatcgttttttttttgg
ggggtggggggggtgGGGAATTGTGGTTTAGTTTTTTTCGTCGGTCTCTC
TCAAATTTGTCAATAAATTAGCCGCATTCTCTTACCATTTTGCAAAACCA
ACGAACAAAATCTTCTCCTATTTCTTTCCACGCTCTTGATCAAGCTTCTA
TTGTCAGAATCCAGATCACGAACACAAACAAAAGCCTCAACAAcaacata
taataataataataatattattattatttcaaatggatggtCATCAAGAT
ATTGAAATTCCTGAATATTTCATTTGCCCTATCTCTCTCCAAATCATGAA
AGATCCTGTAACAGCCATCACAGGCATCACATATGACCGTGAGAGCATTG
AACATTGGCTCTTCCAAGGCAACAACAACGCAGAATGCCCTGTCACCAAA
CAGCCTTTGCCTAAAGACTTAGATTTAACACCAAATCACACATTACGCCG
GTTGATTCAAGCTTGGTGCGCTGATAATTCCGCTTACGGCATCGACCGAA
TCCCCACCCCTAAAGCTCCTCTCAGTAAATTGCAAATCATTAAACTCATC
AAGGATCTTTGGAAGCCTGAGCTCCAAACCAAAACCCTAATCCGGCTCGA
AGTTTTCGCCGCTGAAAATGAAAGGAATAGGAAGTGCATGGCTGAAGCTG
GTGTCCCTAGGGCTCTGCTAACGTACATAGTGAAGTGTTGTGACAAAAAT
CAGGTGGGCGGCTTAGAAGGAGCTTTGATCATActtcatttctttaaaat
tacttCAGAGTATATGAAGCTTTCGGCCTTCGAAATTGATAAGATCGTTG
AATCTTTCACGTGGGTTTTAGCACTTGATGATGAGAGTATTGAGAATCAC
AAGGAGATCAAATCTCATGCATTAAGAATATTGAAGAATATTATCCAAGC
AGCAAGTTCTAAATTTCTTCAAAGGCTGAAACCACAATTTTTTCAGAATA
TAATTAGAGTTTTGAAGCAAAGGGTCATCGCACAACAAGGGGTCAATGCT
GCTTTGCAACTGATGTTAGATGCTTGTCCATCGGGGAGGAACCGTATGAT
GATGGTTGAATCCGGCGCCGTTTTCGAGCTCATTGAGCTGGAATTAACAG
CATCCGAAAAGAAAACAACTGAATTGATTCTtggtattttatttcatttg
tgttctTGTGCTGACGGAAGGGCTCAGTTCCTGAGTCACAGAGCAGCCAT
AGCGGTGGTTACAAAAAGGATCATGCAAGTGTCGCCGGCGGCCGACGATC
GGGCCATTCTGATCCTATCATTGATATGTAAATTTTCaggtaattttaat
tttgtcgtTCAAGAAATGTTGAGGGTCGGTACTGTGTCGAAGCTTTGCTC
GTTTCTTCAAGTTGATTGTGCTGCTTATTTGAAAGATAAGGCTAGGGAAA
TACTTAGGTCTCATTATGATGAATGGAAGGATTCTCCTTGTATTGATGCT
TCTGTTTTGAGTAGATTGATTAGgtgattaattaaaatctattaatcaAT
GTGTAACTAATTGCATTTCAATTGTTGCTAATTACTATATGATTTAAATA
TGAACCTTAGTGATTGATCTTAATTGAAACGGTTTTACGGTTCCTCGAGC
CCTTAAAACTTATCCagttttatatattgtatatATGAACTGTCAGGTGA
TGTCAACTATCTCCTTTCGATTTTagcaattgaatttaaatacaaagatt
ctcgataatattttttttttctttttatgagtTTTAGGAGTTGTTTCTAC
tcttttgattttctattaaatttattagcaaagttcagaaaaaaaaaaaa
actattatagCTTATAATTCAGAAGTAATGAGTGATCAAATTTCCCGATA
AGGATATACTTTCAACTGATATCTCAAGAGATTCATTCAAATGAATTGtc
atttattcaaaaattggATGGTAAGTAGATAAccctattttctttattta
ctaaaaatactctcttttttcttttagtaaattatCTCTCGATTGAATGA
AGTTCTTATATATTGACGATGGTAAgtataaattgtaatttttttttaag
gtggTAAGTATAAATTGTGAAATTTCTGATTCAAGTACTgctctattatc
taattaatGAATCCatgatatattatataattaatgaattgctattaaaa
aaaatgtatgaagaaacatgaaaagaaaaataggttATCAATGCATTAAA
TCTTGTTTTATTCATGAAGCTAATGTAATACCGAATTTGAGTACTATCGA
CCCTCCATCTTTCTTTTGcgaaatttctcattttcgTTTTCATATCCCAG
TTCATGCTATATAAAATGAAGACTTGGAtcttcaaataaatgaaagctTA
GAGgacattaaaacaaaaacagaagaTTTAATTGTAACTAAAATTTGGAG
AATTTGTACCACATGTTGTACTCATTTTAATGTAGCATGAACCCATCGCG
TGTCTGTGTTTTTTCAGGTGAACCTCAACGTAATAAgggaatttatttta
ttaaatcgaAAAGAAATACATCATCACCTCAAAAAATATGCTTGGACATT
TGCACTCATAACAAAAAGACTagaaattcaacaatattaacaagcaaagg
caaagaaaatgaacaaattaagcAATCAATTCTAAAATCTATACTTGCCC
GGTGGCATCTGAAGACAGGAATTTTTGCACATCATGCATGGAGGGATCAT
CTAACTGAGATCTTATTTGAtgttgtagcttttaagccATAAATTGCTAC
AACTataacatttaataaatatgacatttaaataataattatgacaaaaa
tattaaagatagtataaattttttcattataaaagtATGAGATCAAATCA
ACTTAGATTTCAATGTATATCAGTTAACCAAATAATTCAATGTTGTATCT
TTTACGATACAATTATCAAATCTTAATATCAAACAGGATCTAAGTGAAAT
CAACAACCTTTCATAGTAAAATTTGGTCAAACAATTTGCGACACCGCTAG
TTATTCTCTCTATAAGCATCACTCTATTGTTAATAACTcacccaaaaata
attttttttttaatttttaggagAAATTTCTCCTATATATGTGTAGGACA
AAGAATCCAAACTTCCAAAATTGTGTCTTACATTTTAGTTCATTACCTAT
TTgcctataaattaaaaaataattaaatttgaatatgtAAACGTATTGAC
GAACAGCTAAGGAAGACAAAAGACTGACTCGAGAGTCTCGAGTCGACTGA
AAAGTCAC

protein sequence of gene-KPL71_018601-mRNA1_Citrus_sinensis_DVS_B_v1

>gene-KPL71_018601-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018601-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018601-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=414bp
MDGHQDIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNA
ECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNSAYGIDRIPTPKAPLSKL
QIIKLIKDLWKPELQTKTLIRLEVFAAENERNRKCMAEAGVPRALLTYIV
KCCDKNQVGGLEGALIILHFFKITSEYMKLSAFEIDKIVESFTWVLALDD
ESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQFFQNIIRVLKQRVIA
QQGVNAALQLMLDACPSGRNRMMMVESGAVFELIELELTASEKKTTELIL
GILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICK
FSGNFNFVVQEMLRVGTVSKLCSFLQVDCAAYLKDKAREILRSHYDEWKD
SPCIDASVLSRLIR

mRNA from alignment at CM039175.1_Chr6_DVS_B:19593570..19599599-

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=6030bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19593570..19599599- (Citrus sinensis
AACCTTAATTAAGTGGGTCACTCTATGATGTTGTTATAAAAATTACAGCA
TCAATATTGATATAAATATGCATTGTTAGATTTAATTAACAATTCACAAA
ATTAATAGTGTTTTTTAAAGATTAAATAATAAAAAAGAAACAAGTATATT
TTCTATTAAAACTTCTATATTTTCTTTTAAAAAATATGTATTTTAATATT
AACACAACTCAATCTTAGTTTATCCTCTTATTATTATCTCTTTTTCGACA
AAATTATATTGTTCCAATTATAAATAACAAAAGGACCCATATTAACATGT
GTTGTCGAAGATTGAATAATCCATATTTGTTATTTACACATATAAGTTAA
TTTGTCTATTTGCATATTTAATTTTTAATTTTGTTGATGATTTAGAAAAT
ATTTGTCAAATTATAAAAAATAAAATATTGTCCATTAACTTGAATATTAT
CTATTAATTTTTAAGTAATTAGTTATTTATGCACTAAATTAAATCAATGG
TGAAGATAAAAACATATAAATTTAGAGGTTCATAATGATCTTATTATGAG
CAGGGTAAAAATTCATGCAGCATCATAAAAAAAATCCTAACTATGTATTA
AAAAGTAAGTTATCTAAACATCAGGATAACAATGTTCCACAAGTTATAAC
AAAATCTAGGGGTGTTCGTGGATCGGATTTTGCGAGACATCAATCCATAT
CCGATCCATGATTTTGCACTTATAAATTTTTAATCTAATCGAATCCACAG
ATTGGTGAAATTCAATCCAAATCCAATCTATATATATGTGGATCGGATGC
GGATTTGAATCAATGCATGTCCAATTCACCATTTTGCGGATTGGTTTACG
AGCTAAAAATTTTTAATTATGTTCTATCCACGAACTAGCAAAATAAAAAA
ATTAATATAAAAATAATTTTACTACCGATCAAATTCAAAATTAAATAAGA
TTTAAATAAATAAATTGTTTAAATAAAGGTAGAAAATACATTTAAAGTTT
CAAAATATAACACAAAAAAAAATCTCATTTGTTTAGATCAATACATGAAA
ATTAAATGATTAGGAAGATATATTTTTTTATTTAATTATTTTTATTTTAT
ATTATTATTGGATAAGATATAATATGGTATTAATATAACTATATTTTAAC
TTATTTATTTATTTATTAGTAAGTATAATGCCATATTTAGAAGCGTAATT
TTTTTACGAAACAATTTTTTTTTTTTTTGTGGATTCGCAGATTTTTGCGG
ATTTACAAAAGTAAATCCATATCTAATCCACCGACTGAAGATTTTTAAAT
TTTCAATCCAATCCAATCCATCAATTCACGGATTGGATTTTTACAAATTA
GATTTCTATGGATCAAATGGATTGAGCAGATTAGATTAGATTCTAAACAC
CCCTAACAAAATATGAGAAAACGCCATTGCTAATTAGCACTTGTACTATT
GTACGCTCTAAAATTTAAATTTGTACCTATAAAATTAAAAATTAAAAATT
AAAAATTAAAAATTGAAGAAATCATTTCTCAAAAACTGAGCATGCGTGTA
CAGAAATTAATCTGATCAAGTAGTAATATTATCTGGTCAATTTTATGTAC
CAGTAAACCCAGCAGCTGACTCAACCTTTTTGACCTCATGAATAAATGTG
CCCCGGACGACTTTGAGTCGCTTTTCAATTATTGACTTGTTGCAATGCAC
TCGCATGTATCACGTTACGTTATCTAGGTCTGGATTAATTCATCATCCAA
TATTTCCATACAGTGCTGATTAAATTGATTGGGTATACATGCTCTTATCT
TTTCATTAGCCCAGTAAATGGGCTCAAAGAAGTTCAAATTTGAAACCGAT
ACGTTCATTAACTTGTTGGTGCAACTCATATCCAATTTCACAAGTCTTAA
AATACATTTTTATATCTACAAATGCATGCACATGCAAGGTGAATTGATTA
GTCAAAGGAATACGAATGAGGAACGTATTTGAATTGAGCTGCACACAATG
CGCACATTAAGATTGGTCCATATTCGGAGATCATACCCTTTTTATTTTAA
TTTTGAATATTATATTATGAATTTTATTGATTATATGATTTATTGTGACC
TACCTTAATGCTGCTCGTTTAATGTTCAACCTAAAAATTTACTTTGTAAA
AGTAGAAACTTACTCTAGAAGCATAAGAAATTTTTATTAAAATTTCTTAT
GCTACACGTGCAAAGAATCGAACTCACCGAAGTTTTATAATATAAAAGCC
TTATAAATTAGGAGCAAGTGTTAATTATTCAAGATGGCCAATTTTAGATA
AAAAAGAACCATTATTTGAATCGCCAGTGTTTTTTTTTTAAATGGAAAAC
TTCAATTAAAAACTTAAAGTAAAAGACTTGTTTGAATTGGAATTTCCTCC
AACCAAATCACACTAACAGCATATTTAGCTAATCACCACTTTTGTTTTGT
TGAAATTTTTATGCCATTGATGCAAATGCAAGTAAATAAACAGTTTTATA
CGCGCAAATTAATTTGAATGCAAGCTGTTTTAATTTTCAATAAAGTTAAT
AACAATAATAATAAACAAAAAAGGAAACAGAAAAAAGCTGCATGAATTGG
CAATTACGTGTAACTTTGGATAGAGCCAAAGCCAATCGGCCCTCACTTTT
TTCTAACTTTGACCGCCGAACTCCATTAGAATAATATAAAAATATATTCA
TTTAATTCAGTTTAAATTAAATGTCACAGAGAATTTACGACTAGTAAGCT
ATGACCATCGTTTTTTTTTTGGGGGGTGGGGGGGGTGGGGAATTGTGGTT
TAGTTTTTTTCGTCGGTCTCTCTCAAATTTGTCAATAAATTAGCCGCATT
CTCTTACCATTTTGCAAAACCAACGAACAAAATCTTCTCCTATTTCTTTC
CACGCTCTTGATCAAGCTTCTATTGTCAGAATCCAGATCACGAACACAAA
CAAAAGCCTCAACAACAACATATAATAATAATAATAATATTATTATTATT
TCAAATGGATGGTCATCAAGATATTGAAATTCCTGAATATTTCATTTGCC
CTATCTCTCTCCAAATCATGAAAGATCCTGTAACAGCCATCACAGGCATC
ACATATGACCGTGAGAGCATTGAACATTGGCTCTTCCAAGGCAACAACAA
CGCAGAATGCCCTGTCACCAAACAGCCTTTGCCTAAAGACTTAGATTTAA
CACCAAATCACACATTACGCCGGTTGATTCAAGCTTGGTGCGCTGATAAT
TCCGCTTACGGCATCGACCGAATCCCCACCCCTAAAGCTCCTCTCAGTAA
ATTGCAAATCATTAAACTCATCAAGGATCTTTGGAAGCCTGAGCTCCAAA
CCAAAACCCTAATCCGGCTCGAAGTTTTCGCCGCTGAAAATGAAAGGAAT
AGGAAGTGCATGGCTGAAGCTGGTGTCCCTAGGGCTCTGCTAACGTACAT
AGTGAAGTGTTGTGACAAAAATCAGGTGGGCGGCTTAGAAGGAGCTTTGA
TCATACTTCATTTCTTTAAAATTACTTCAGAGTATATGAAGCTTTCGGCC
TTCGAAATTGATAAGATCGTTGAATCTTTCACGTGGGTTTTAGCACTTGA
TGATGAGAGTATTGAGAATCACAAGGAGATCAAATCTCATGCATTAAGAA
TATTGAAGAATATTATCCAAGCAGCAAGTTCTAAATTTCTTCAAAGGCTG
AAACCACAATTTTTTCAGAATATAATTAGAGTTTTGAAGCAAAGGGTCAT
CGCACAACAAGGGGTCAATGCTGCTTTGCAACTGATGTTAGATGCTTGTC
CATCGGGGAGGAACCGTATGATGATGGTTGAATCCGGCGCCGTTTTCGAG
CTCATTGAGCTGGAATTAACAGCATCCGAAAAGAAAACAACTGAATTGAT
TCTTGGTATTTTATTTCATTTGTGTTCTTGTGCTGACGGAAGGGCTCAGT
TCCTGAGTCACAGAGCAGCCATAGCGGTGGTTACAAAAAGGATCATGCAA
GTGTCGCCGGCGGCCGACGATCGGGCCATTCTGATCCTATCATTGATATG
TAAATTTTCAGGTAATTTTAATTTTGTCGTTCAAGAAATGTTGAGGGTCG
GTACTGTGTCGAAGCTTTGCTCGTTTCTTCAAGTTGATTGTGCTGCTTAT
TTGAAAGATAAGGCTAGGGAAATACTTAGGTCTCATTATGATGAATGGAA
GGATTCTCCTTGTATTGATGCTTCTGTTTTGAGTAGATTGATTAGGTGAT
TAATTAAAATCTATTAATCAATGTGTAACTAATTGCATTTCAATTGTTGC
TAATTACTATATGATTTAAATATGAACCTTAGTGATTGATCTTAATTGAA
ACGGTTTTACGGTTCCTCGAGCCCTTAAAACTTATCCAGTTTTATATATT
GTATATATGAACTGTCAGGTGATGTCAACTATCTCCTTTCGATTTTAGCA
ATTGAATTTAAATACAAAGATTCTCGATAATATTTTTTTTTTCTTTTTAT
GAGTTTTAGGAGTTGTTTCTACTCTTTTGATTTTCTATTAAATTTATTAG
CAAAGTTCAGAAAAAAAAAAAAACTATTATAGCTTATAATTCAGAAGTAA
TGAGTGATCAAATTTCCCGATAAGGATATACTTTCAACTGATATCTCAAG
AGATTCATTCAAATGAATTGTCATTTATTCAAAAATTGGATGGTAAGTAG
ATAACCCTATTTTCTTTATTTACTAAAAATACTCTCTTTTTTCTTTTAGT
AAATTATCTCTCGATTGAATGAAGTTCTTATATATTGACGATGGTAAGTA
TAAATTGTAATTTTTTTTTAAGGTGGTAAGTATAAATTGTGAAATTTCTG
ATTCAAGTACTGCTCTATTATCTAATTAATGAATCCATGATATATTATAT
AATTAATGAATTGCTATTAAAAAAAATGTATGAAGAAACATGAAAAGAAA
AATAGGTTATCAATGCATTAAATCTTGTTTTATTCATGAAGCTAATGTAA
TACCGAATTTGAGTACTATCGACCCTCCATCTTTCTTTTGCGAAATTTCT
CATTTTCGTTTTCATATCCCAGTTCATGCTATATAAAATGAAGACTTGGA
TCTTCAAATAAATGAAAGCTTAGAGGACATTAAAACAAAAACAGAAGATT
TAATTGTAACTAAAATTTGGAGAATTTGTACCACATGTTGTACTCATTTT
AATGTAGCATGAACCCATCGCGTGTCTGTGTTTTTTCAGGTGAACCTCAA
CGTAATAAGGGAATTTATTTTATTAAATCGAAAAGAAATACATCATCACC
TCAAAAAATATGCTTGGACATTTGCACTCATAACAAAAAGACTAGAAATT
CAACAATATTAACAAGCAAAGGCAAAGAAAATGAACAAATTAAGCAATCA
ATTCTAAAATCTATACTTGCCCGGTGGCATCTGAAGACAGGAATTTTTGC
ACATCATGCATGGAGGGATCATCTAACTGAGATCTTATTTGATGTTGTAG
CTTTTAAGCCATAAATTGCTACAACTATAACATTTAATAAATATGACATT
TAAATAATAATTATGACAAAAATATTAAAGATAGTATAAATTTTTTCATT
ATAAAAGTATGAGATCAAATCAACTTAGATTTCAATGTATATCAGTTAAC
CAAATAATTCAATGTTGTATCTTTTACGATACAATTATCAAATCTTAATA
TCAAACAGGATCTAAGTGAAATCAACAACCTTTCATAGTAAAATTTGGTC
AAACAATTTGCGACACCGCTAGTTATTCTCTCTATAAGCATCACTCTATT
GTTAATAACTCACCCAAAAATAATTTTTTTTTTAATTTTTAGGAGAAATT
TCTCCTATATATGTGTAGGACAAAGAATCCAAACTTCCAAAATTGTGTCT
TACATTTTAGTTCATTACCTATTTGCCTATAAATTAAAAAATAATTAAAT
TTGAATATGTAAACGTATTGACGAACAGCTAAGGAAGACAAAAGACTGAC
TCGAGAGTCTCGAGTCGACTGAAAAGTCAC

Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:19593570..19599599-

>gene-KPL71_018601-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018601-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018601-mRNA1; organism=Citrus sinensis; type=CDS; length=1245bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19593570..19599599- (Citrus sinensis
ATGGATGGTCATCAAGATATTGAAATTCCTGAATATTTCATTTGCCCTAT
CTCTCTCCAAATCATGAAAGATCCTGTAACAGCCATCACAGGCATCACAT
ATGACCGTGAGAGCATTGAACATTGGCTCTTCCAAGGCAACAACAACGCA
GAATGCCCTGTCACCAAACAGCCTTTGCCTAAAGACTTAGATTTAACACC
AAATCACACATTACGCCGGTTGATTCAAGCTTGGTGCGCTGATAATTCCG
CTTACGGCATCGACCGAATCCCCACCCCTAAAGCTCCTCTCAGTAAATTG
CAAATCATTAAACTCATCAAGGATCTTTGGAAGCCTGAGCTCCAAACCAA
AACCCTAATCCGGCTCGAAGTTTTCGCCGCTGAAAATGAAAGGAATAGGA
AGTGCATGGCTGAAGCTGGTGTCCCTAGGGCTCTGCTAACGTACATAGTG
AAGTGTTGTGACAAAAATCAGGTGGGCGGCTTAGAAGGAGCTTTGATCAT
ACTTCATTTCTTTAAAATTACTTCAGAGTATATGAAGCTTTCGGCCTTCG
AAATTGATAAGATCGTTGAATCTTTCACGTGGGTTTTAGCACTTGATGAT
GAGAGTATTGAGAATCACAAGGAGATCAAATCTCATGCATTAAGAATATT
GAAGAATATTATCCAAGCAGCAAGTTCTAAATTTCTTCAAAGGCTGAAAC
CACAATTTTTTCAGAATATAATTAGAGTTTTGAAGCAAAGGGTCATCGCA
CAACAAGGGGTCAATGCTGCTTTGCAACTGATGTTAGATGCTTGTCCATC
GGGGAGGAACCGTATGATGATGGTTGAATCCGGCGCCGTTTTCGAGCTCA
TTGAGCTGGAATTAACAGCATCCGAAAAGAAAACAACTGAATTGATTCTT
GGTATTTTATTTCATTTGTGTTCTTGTGCTGACGGAAGGGCTCAGTTCCT
GAGTCACAGAGCAGCCATAGCGGTGGTTACAAAAAGGATCATGCAAGTGT
CGCCGGCGGCCGACGATCGGGCCATTCTGATCCTATCATTGATATGTAAA
TTTTCAGGTAATTTTAATTTTGTCGTTCAAGAAATGTTGAGGGTCGGTAC
TGTGTCGAAGCTTTGCTCGTTTCTTCAAGTTGATTGTGCTGCTTATTTGA
AAGATAAGGCTAGGGAAATACTTAGGTCTCATTATGATGAATGGAAGGAT
TCTCCTTGTATTGATGCTTCTGTTTTGAGTAGATTGATTAGGTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR003613	Ubox_domain
IPR011989	ARM-like
IPR045185	PUB22/23/24-like
IPR045210	RING-Ubox_PUB
IPR016024	ARM-type_fold

Vocabulary: **Biological Process**
Term	Definition
GO:0016567	protein ubiquitination

Vocabulary: **Molecular Function**
Term	Definition
GO:0004842	ubiquitin-protein transferase activity
GO:0061630	ubiquitin protein ligase activity