Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CMJ_chr3_015190.1.exon2 CMJ_chr3_015190.1.exon2_cmj_v1 Citrus maxima exon CMJ_chr3_015190.1.exon1 CMJ_chr3_015190.1.exon1_cmj_v1 Citrus maxima exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CMJ_chr3_015190.1.cds.2 CMJ_chr3_015190.1.cds.2_cmj_v1 Citrus maxima CDS CMJ_chr3_015190.1.cds.1 CMJ_chr3_015190.1.cds.1_cmj_v1 Citrus maxima CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
CMJ_chr3_015190.1_cmj_v1 CMJ_chr3_015190.1_cmj_v1 Citrus maxima polypeptide CMJ_chr3_015190.1_cmj_v1 CMJ_chr3_015190.1_cmj_v1-protein Citrus maxima polypeptide
Homology
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Match:
A0A067H1T4|A0A067H1T4_CITSI (FBA_1 domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g048458mg PE=4 SV=1)
HSP 1 Score: 322.783 bits (826), Expect = 3.813e-107
Identity = 164/240 (68.33%), Postives = 183/240 (76.25%), Query Frame = 0
Query: 9 FVWKKEMKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASEQLHREHNEIQVHSLKN-----IQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNGTDKKII--------------------------REISVGVLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEHWINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLVLCDHKTQEIVQFGSSNWVANAVTYTESLVSP 217
F+W+KEMKGSFATFAI GFGY HRT DFKILL VHAREVASEQ RE ++IQV+SLKN IQPN+PC+PCLSSNSTVHL+GA W+A+RKE +GT+K II RE S+G+LEKSIALFVS H+ED+ GLGIC+VYVM ENI VEHWINL TVDLRAQFAWQYLGF AN EVML NDDG+LVL DHKTQE+VQ SSNWVANAV YTESLVSP
Sbjct: 148 FIWEKEMKGSFATFAITGFGYDHRTSDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENI-EVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELVLYDHKTQEVVQCESSNWVANAVIYTESLVSP 386
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Match:
A0A2H5PPR7|A0A2H5PPR7_CITUN (F-box domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_156100 PE=4 SV=1)
HSP 1 Score: 321.627 bits (823), Expect = 1.086e-106
Identity = 163/240 (67.92%), Postives = 183/240 (76.25%), Query Frame = 0
Query: 9 FVWKKEMKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASEQLHREHNEIQVHSLKN-----IQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNGTDKKII--------------------------REISVGVLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEHWINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLVLCDHKTQEIVQFGSSNWVANAVTYTESLVSP 217
F+W+KEMKGSFATFAI GFGY HRT DFKILL VHAREVASEQ RE ++IQV+SLKN IQPN+PC+PCLSSNSTVHL+GA W+A+RKE +GT+K II RE S+G+LEKSIALFVS H+ED+ GLGIC+VYVM ENI VEHWINL TVDLRAQFAWQYLGF AN EVML NDDG+LVL DHKTQE+VQ SSNWVANAV YT+SLVSP
Sbjct: 148 FIWEKEMKGSFATFAITGFGYDHRTSDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENI-EVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELVLYDHKTQEVVQCESSNWVANAVIYTQSLVSP 386
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Match:
A0A2H5PPR6|A0A2H5PPR6_CITUN (F-box domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_156110 PE=4 SV=1)
HSP 1 Score: 291.197 bits (744), Expect = 1.211e-94
Identity = 147/220 (66.82%), Postives = 166/220 (75.45%), Query Frame = 0
Query: 9 FVWKKEMKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASEQLHREHNEIQVHSLKN-----IQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNGTDKKII--------------------------REISVGVLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEHWINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLVLCDHKTQEIVQ 197
F+W+KEMKGSFATFAI GFGY HRT DFKILL VHAREVASEQ RE ++IQV+SLKN IQPN+PC+PCLSSNSTVHL+GA W+A+RKE +GT+K II RE S+G+LEKSIALFVS H+ED+ GLGIC+VYVM ENI VEHWINL TVDLRAQFAWQYLGF AN EVML NDDG+LVL DHKTQE+VQ
Sbjct: 148 FIWEKEMKGSFATFAITGFGYDHRTSDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENI-EVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELVLYDHKTQEVVQ 366
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Match:
V4T0Z6|V4T0Z6_CITCL (FBA_1 domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v100035151mg PE=4 SV=1)
HSP 1 Score: 244.202 bits (622), Expect = 6.370e-77
Identity = 130/209 (62.20%), Postives = 147/209 (70.33%), Query Frame = 0
Query: 9 FVWKKEMKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASEQLHREHNEIQVHSLKN-----IQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNGTDKKII--------------------------REISVGVLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEHWINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLV 186
F W+KE S AT FGY HRT DFKILL VHAREVASEQ RE ++IQV+SLKN IQPN+PC+PCLSSNSTVHL+GA W+A+RKE +GT+K II RE S+G+LEKSIALFVS H+ED+ GLGIC+VYVM ENI VEHWINL TVDLRAQFAWQYLGF AN EVML NDDG+LV
Sbjct: 126 FDWEKEQYRSSAT---ARFGYDHRTSDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENI-EVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELV 330
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Match:
A0A2H5MXK5|A0A2H5MXK5_CITUN (FBA_1 domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_283900 PE=4 SV=1)
HSP 1 Score: 164.081 bits (414), Expect = 1.196e-47
Identity = 100/184 (54.35%), Postives = 112/184 (60.87%), Query Frame = 0
Query: 15 MKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASEQLHREHNEIQVHSLKN-----IQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNGTDKKIIREISVG--VLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEHWINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLVLCDHK 191
MKGSF TFAI GFGY HRT KILL RE+NEIQV+SL N +Q NIP +P LSSNSTVHL+GA WLAVR+E +GTDK II G A ++ +R GLG CNV VM ENIG VEHWINL TVDLRAQF AN EVM ND G+LVL D +
Sbjct: 1 MKGSFTTFAIPGFGYDHRTSALKILLNCP----------REYNEIQVYSLTNNCWRRVQHNIPSIPFLSSNSTVHLNGAVHWLAVRRESDGTDKHIIMSFDFGDETFRDREATDNLQSTDYNRAGLGSCNVCVMEENIG-VEHWINLFTVDLRAQFG-------ANDEVMQRNDAGELVLYDKQ 166
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Match:
A0A067GPL8|A0A067GPL8_CITSI (FBA_1 domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g046250mg PE=4 SV=1)
HSP 1 Score: 160.229 bits (404), Expect = 3.453e-46
Identity = 99/182 (54.40%), Postives = 110/182 (60.44%), Query Frame = 0
Query: 15 MKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASEQLHREHNEIQVHSLKN-----IQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNGTDKKIIREISVG--VLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEHWINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLVLCD 189
MK SF TFAI GFGY HRT KILL RE+NEIQV+SL N +Q NIP +P LSSNSTVHL+GA WLAVR+E +GTDK II G A ++ +R GLG CNV VM ENIG VEHWINL TVDLRAQF AN EVM ND G+LVL D
Sbjct: 1 MKVSFTTFAIPGFGYDHRTSALKILLNCP----------REYNEIQVYSLTNNCWRRVQHNIPSIPFLSSNSTVHLNGAVHWLAVRRESDGTDKHIIMSFDFGDETFRDREATDNLQSTDYNRAGLGSCNVCVMEENIG-VEHWINLFTVDLRAQFG-------ANDEVMQRNDAGELVLYD 164
The following BLAST results are available for this feature:
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL )
Total hits: 6
50 100 150 200 250 300 350 400 450 500 550 600 650 Expect = 3.81e-107 / Id = 68.33 Expect = 1.09e-106 / Id = 67.92 Expect = 1.21e-94 / Id = 66.82 Expect = 6.37e-77 / Id = 62.20 Expect = 1.20e-47 / Id = 54.35 Expect = 3.45e-46 / Id = 54.40 Sequence A0A067H1T4|A0A067H1T4_CITSI A0A2H5PPR7|A0A2H5PPR7_CITUN A0A2H5PPR6|A0A2H5PPR6_CITUN V4T0Z6|V4T0Z6_CITCL A0A2H5MXK5|A0A2H5MXK5_CITUN A0A067GPL8|A0A067GPL8_CITSI back to top
Sequences
The
following sequences are available for this feature:
mRNA sequence
>CMJ_chr3_015190.1_cmj_v1 ID=CMJ_chr3_015190.1_cmj_v1; Name=CMJ_chr3_015190.1; organism=Citrus maxima; type=mRNA; length=654bp back to top protein sequence of CMJ_chr3_015190.1_cmj_v1
>CMJ_chr3_015190.1_cmj_v1 ID=CMJ_chr3_015190.1_cmj_v1; Name=CMJ_chr3_015190.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=218bp back to top mRNA from alignment at chr3:33848577..33849985-
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=1409bp; location=Sequence derived from: chr3:33848577..33849985- (Citrus maximaATGGATCCTCTGCTACAACTAGTTTTTGTTTGGAAGAAAGAAATGAAAGG
ATCATTTGCTACTTTTGCCATTATAGGATTTGGCTATGGTCATAGAACTG
GTGACTTCAAGATCTTACTTACTGTCCACGCTAGAGAAGTTGCTTCTGAA
CAATTACACCGCGAGCACAATGAGATTCAAGTTCATTCACTGAAAAACAT
TCAACCTAATATTCCATGTATGCCATGCCTGAGTTCGAATTCGACTGTGC
ACTTAAGTGGAGCTCAACGTTGGCTGGCAGTGAGAAAAGAGAGAAATGGT
ACTGATAAAAAAATTATCAG AGAAATATCAGTTGGGGTACTCGAA
AAATCAATTGCACTGTTTGTTTCAAGTCATAGTGAAGATAGCAGAACAGG
ACTTGGTATTTGTAATGTGTATGTGATGATGGAGAATATAGGATCAGTAG
AGCATTGGATTAATCTGCTCACAGTTGATTTAAGAGCACAATTTGCATGG
CAGTACTTAGGTTTCAGAGCAAATGGTGAAGTAATGCTGATAAATGATGA
TGGAGACCTGGTTTTGTGTGATCATAAAACTCAGGAAATTGTACAATTTG
GAAGCAGTAATTGGGTTGCTAATGCCGTCACATATACAGAAAGCCTAGTT
TCACCGTAG back to top Coding sequence (CDS) from alignment at chr3:33848577..33849985-
>CMJ_chr3_015190.1_cmj_v1 ID=CMJ_chr3_015190.1_cmj_v1; Name=CMJ_chr3_015190.1; organism=Citrus maxima; type=CDS; length=654bp; location=Sequence derived from: chr3:33848577..33849985- (Citrus maxima back to top
