Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CMJ_chr3_015190.1.exon2 CMJ_chr3_015190.1.exon2_cmj_v1 Citrus maxima exon
CMJ_chr3_015190.1.exon1 CMJ_chr3_015190.1.exon1_cmj_v1 Citrus maxima exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CMJ_chr3_015190.1.cds.2 CMJ_chr3_015190.1.cds.2_cmj_v1 Citrus maxima CDS
CMJ_chr3_015190.1.cds.1 CMJ_chr3_015190.1.cds.1_cmj_v1 Citrus maxima CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
CMJ_chr3_015190.1_cmj_v1 CMJ_chr3_015190.1_cmj_v1 Citrus maxima polypeptide
CMJ_chr3_015190.1_cmj_v1 CMJ_chr3_015190.1_cmj_v1-protein Citrus maxima polypeptide
Homology
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Match:
A0A067H1T4|A0A067H1T4_CITSI (FBA_1 domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g048458mg PE=4 SV=1)
HSP 1 Score: 322.783 bits (826), Expect = 3.813e-107
Identity = 164/240 (68.33%), Postives = 183/240 (76.25%), Query Frame = 0
Query: 9 FVWKKEMKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASEQLHREHNEIQVHSLKN-----IQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNGTDKKII--------------------------REISVGVLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEHWINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLVLCDHKTQEIVQFGSSNWVANAVTYTESLVSP 217
F+W+KEMKGSFATFAI GFGY HRT DFKILL VHAREVASEQ RE ++IQV+SLKN IQPN+PC+PCLSSNSTVHL+GA W+A+RKE +GT+K II RE S+G+LEKSIALFVS H+ED+ GLGIC+VYVM ENI VEHWINL TVDLRAQFAWQYLGF AN EVML NDDG+LVL DHKTQE+VQ SSNWVANAV YTESLVSP
Sbjct: 148 FIWEKEMKGSFATFAITGFGYDHRTSDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENI-EVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELVLYDHKTQEVVQCESSNWVANAVIYTESLVSP 386
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Match:
A0A2H5PPR7|A0A2H5PPR7_CITUN (F-box domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_156100 PE=4 SV=1)
HSP 1 Score: 321.627 bits (823), Expect = 1.086e-106
Identity = 163/240 (67.92%), Postives = 183/240 (76.25%), Query Frame = 0
Query: 9 FVWKKEMKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASEQLHREHNEIQVHSLKN-----IQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNGTDKKII--------------------------REISVGVLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEHWINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLVLCDHKTQEIVQFGSSNWVANAVTYTESLVSP 217
F+W+KEMKGSFATFAI GFGY HRT DFKILL VHAREVASEQ RE ++IQV+SLKN IQPN+PC+PCLSSNSTVHL+GA W+A+RKE +GT+K II RE S+G+LEKSIALFVS H+ED+ GLGIC+VYVM ENI VEHWINL TVDLRAQFAWQYLGF AN EVML NDDG+LVL DHKTQE+VQ SSNWVANAV YT+SLVSP
Sbjct: 148 FIWEKEMKGSFATFAITGFGYDHRTSDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENI-EVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELVLYDHKTQEVVQCESSNWVANAVIYTQSLVSP 386
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Match:
A0A2H5PPR6|A0A2H5PPR6_CITUN (F-box domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_156110 PE=4 SV=1)
HSP 1 Score: 291.197 bits (744), Expect = 1.211e-94
Identity = 147/220 (66.82%), Postives = 166/220 (75.45%), Query Frame = 0
Query: 9 FVWKKEMKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASEQLHREHNEIQVHSLKN-----IQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNGTDKKII--------------------------REISVGVLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEHWINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLVLCDHKTQEIVQ 197
F+W+KEMKGSFATFAI GFGY HRT DFKILL VHAREVASEQ RE ++IQV+SLKN IQPN+PC+PCLSSNSTVHL+GA W+A+RKE +GT+K II RE S+G+LEKSIALFVS H+ED+ GLGIC+VYVM ENI VEHWINL TVDLRAQFAWQYLGF AN EVML NDDG+LVL DHKTQE+VQ
Sbjct: 148 FIWEKEMKGSFATFAITGFGYDHRTSDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENI-EVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELVLYDHKTQEVVQ 366
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Match:
V4T0Z6|V4T0Z6_CITCL (FBA_1 domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v100035151mg PE=4 SV=1)
HSP 1 Score: 244.202 bits (622), Expect = 6.370e-77
Identity = 130/209 (62.20%), Postives = 147/209 (70.33%), Query Frame = 0
Query: 9 FVWKKEMKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASEQLHREHNEIQVHSLKN-----IQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNGTDKKII--------------------------REISVGVLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEHWINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLV 186
F W+KE S AT FGY HRT DFKILL VHAREVASEQ RE ++IQV+SLKN IQPN+PC+PCLSSNSTVHL+GA W+A+RKE +GT+K II RE S+G+LEKSIALFVS H+ED+ GLGIC+VYVM ENI VEHWINL TVDLRAQFAWQYLGF AN EVML NDDG+LV
Sbjct: 126 FDWEKEQYRSSAT---ARFGYDHRTSDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENI-EVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELV 330
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Match:
A0A2H5MXK5|A0A2H5MXK5_CITUN (FBA_1 domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_283900 PE=4 SV=1)
HSP 1 Score: 164.081 bits (414), Expect = 1.196e-47
Identity = 100/184 (54.35%), Postives = 112/184 (60.87%), Query Frame = 0
Query: 15 MKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASEQLHREHNEIQVHSLKN-----IQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNGTDKKIIREISVG--VLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEHWINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLVLCDHK 191
MKGSF TFAI GFGY HRT KILL RE+NEIQV+SL N +Q NIP +P LSSNSTVHL+GA WLAVR+E +GTDK II G A ++ +R GLG CNV VM ENIG VEHWINL TVDLRAQF AN EVM ND G+LVL D +
Sbjct: 1 MKGSFTTFAIPGFGYDHRTSALKILLNCP----------REYNEIQVYSLTNNCWRRVQHNIPSIPFLSSNSTVHLNGAVHWLAVRRESDGTDKHIIMSFDFGDETFRDREATDNLQSTDYNRAGLGSCNVCVMEENIG-VEHWINLFTVDLRAQFG-------ANDEVMQRNDAGELVLYDKQ 166
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Match:
A0A067GPL8|A0A067GPL8_CITSI (FBA_1 domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g046250mg PE=4 SV=1)
HSP 1 Score: 160.229 bits (404), Expect = 3.453e-46
Identity = 99/182 (54.40%), Postives = 110/182 (60.44%), Query Frame = 0
Query: 15 MKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASEQLHREHNEIQVHSLKN-----IQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNGTDKKIIREISVG--VLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEHWINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLVLCD 189
MK SF TFAI GFGY HRT KILL RE+NEIQV+SL N +Q NIP +P LSSNSTVHL+GA WLAVR+E +GTDK II G A ++ +R GLG CNV VM ENIG VEHWINL TVDLRAQF AN EVM ND G+LVL D
Sbjct: 1 MKVSFTTFAIPGFGYDHRTSALKILLNCP----------REYNEIQVYSLTNNCWRRVQHNIPSIPFLSSNSTVHLNGAVHWLAVRRESDGTDKHIIMSFDFGDETFRDREATDNLQSTDYNRAGLGSCNVCVMEENIG-VEHWINLFTVDLRAQFG-------ANDEVMQRNDAGELVLYD 164
The following BLAST results are available for this feature:
BLAST of CMJ_chr3_015190.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL )
Total hits: 6
50 100 150 200 250 300 350 400 450 500 550 600 650 Expect = 3.81e-107 / Id = 68.33 Expect = 1.09e-106 / Id = 67.92 Expect = 1.21e-94 / Id = 66.82 Expect = 6.37e-77 / Id = 62.20 Expect = 1.20e-47 / Id = 54.35 Expect = 3.45e-46 / Id = 54.40 Sequence A0A067H1T4|A0A067H1T4_CITSI A0A2H5PPR7|A0A2H5PPR7_CITUN A0A2H5PPR6|A0A2H5PPR6_CITUN V4T0Z6|V4T0Z6_CITCL A0A2H5MXK5|A0A2H5MXK5_CITUN A0A067GPL8|A0A067GPL8_CITSI
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>CMJ_chr3_015190.1_cmj_v1 ID=CMJ_chr3_015190.1_cmj_v1; Name=CMJ_chr3_015190.1; organism=Citrus maxima; type=mRNA; length=654bp ATGGATCCTCTGCTACAACTAGTTTTTGTTTGGAAGAAAGAAATGAAAGG ATCATTTGCTACTTTTGCCATTATAGGATTTGGCTATGGTCATAGAACTG GTGACTTCAAGATCTTACTTACTGTCCACGCTAGAGAAGTTGCTTCTGAA CAATTACACCGCGAGCACAATGAGATTCAAGTTCATTCACTGAAAAACAT TCAACCTAATATTCCATGTATGCCATGCCTGAGTTCGAATTCGACTGTGC ACTTAAGTGGAGCTCAACGTTGGCTGGCAGTGAGAAAAGAGAGAAATGGT ACTGATAAAAAAATTATCAGAGAAATATCAGTTGGGGTACTCGAAAAATC AATTGCACTGTTTGTTTCAAGTCATAGTGAAGATAGCAGAACAGGACTTG GTATTTGTAATGTGTATGTGATGATGGAGAATATAGGATCAGTAGAGCAT TGGATTAATCTGCTCACAGTTGATTTAAGAGCACAATTTGCATGGCAGTA CTTAGGTTTCAGAGCAAATGGTGAAGTAATGCTGATAAATGATGATGGAG ACCTGGTTTTGTGTGATCATAAAACTCAGGAAATTGTACAATTTGGAAGC AGTAATTGGGTTGCTAATGCCGTCACATATACAGAAAGCCTAGTTTCACC GTAG back to top protein sequence of CMJ_chr3_015190.1_cmj_v1
>CMJ_chr3_015190.1_cmj_v1 ID=CMJ_chr3_015190.1_cmj_v1; Name=CMJ_chr3_015190.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=218bp MDPLLQLVFVWKKEMKGSFATFAIIGFGYGHRTGDFKILLTVHAREVASE QLHREHNEIQVHSLKNIQPNIPCMPCLSSNSTVHLSGAQRWLAVRKERNG TDKKIIREISVGVLEKSIALFVSSHSEDSRTGLGICNVYVMMENIGSVEH WINLLTVDLRAQFAWQYLGFRANGEVMLINDDGDLVLCDHKTQEIVQFGS SNWVANAVTYTESLVSP* back to top mRNA from alignment at chr3:33848577..33849985-
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=1409bp; location=Sequence derived from: chr3:33848577..33849985- (Citrus maximaATGGATCCTCTGCTACAACTAGTTTTTGTTTGGAAGAAAGAAATGAAAGG
ATCATTTGCTACTTTTGCCATTATAGGATTTGGCTATGGTCATAGAACTG
GTGACTTCAAGATCTTACTTACTGTCCACGCTAGAGAAGTTGCTTCTGAA
CAATTACACCGCGAGCACAATGAGATTCAAGTTCATTCACTGAAAAACAT
TCAACCTAATATTCCATGTATGCCATGCCTGAGTTCGAATTCGACTGTGC
ACTTAAGTGGAGCTCAACGTTGGCTGGCAGTGAGAAAAGAGAGAAATGGT
ACTGATAAAAAAATTATCAG GTCATTCGATTTCGGTAATGGAACGTTCAG
AGATAGAAAGCTGCCTAATCATTTGTTTGCGGGATATGCTTTGACAAGAC
CAGCCATGCCCTGGACGAGGAGCCAGCCGCCTTACAATGGAGCAGATGAG
CAGAAGTCTGGTAGCAGGTTTCCACGGGCAGGAGTATTCTGTTCGTTCAC
GAAGACACCCTCCTCGGGACCATAGGTGGGTAGACCTGGTCCATGACGGT
TGGCGAAACGAGCACTCCTATCTGAGAATCAAGGCACGTAGTCCACTCAG
CCACAACTACGATAGTGAAGCACCCACTTCCGAGAGTTGAGGGAGGTGAC
GAACGTGGATCGTGGGAAAGGCCGGATTCGAAGGAAGGCTATAAAAGGGT
AATCAGCGAAGGTAAAGGGGTTAGACTTTTTGATATTAGAACTTAAGAGA
AGAGTTTTCTTCTTTGAAAAGAGAGAGAGAAATCATAAGAGAGCCGCAAG
ATTAGTGGTCGTGTTTCCTAGGAAAAAACCTACATTTCTGACTTGAACGT
CGGAGGGTTTACGCCGGGAAAACACCCTGCGTGCTCTGACCAGTTTCTGT
GCACACAAGAGTCTGTGGAGAGGAAGTCTTACAGGGCATTGTTCTACTTG
GTTAGAAGAGCTACGAGGAGAACCTGCTGTTGGTCGTGAATTTGAGAGTT
GAAGAGGGATCCTGGTAGAGAACGAGCAGACACCAGAATCTCGCATCAAC
ATCATTTGCACAATATTGATTATAGAGAAATATCAGTTGGGGTACTCGAA
AAATCAATTGCACTGTTTGTTTCAAGTCATAGTGAAGATAGCAGAACAGG
ACTTGGTATTTGTAATGTGTATGTGATGATGGAGAATATAGGATCAGTAG
AGCATTGGATTAATCTGCTCACAGTTGATTTAAGAGCACAATTTGCATGG
CAGTACTTAGGTTTCAGAGCAAATGGTGAAGTAATGCTGATAAATGATGA
TGGAGACCTGGTTTTGTGTGATCATAAAACTCAGGAAATTGTACAATTTG
GAAGCAGTAATTGGGTTGCTAATGCCGTCACATATACAGAAAGCCTAGTT
TCACCGTAG back to top Coding sequence (CDS) from alignment at chr3:33848577..33849985-
>CMJ_chr3_015190.1_cmj_v1 ID=CMJ_chr3_015190.1_cmj_v1; Name=CMJ_chr3_015190.1; organism=Citrus maxima; type=CDS; length=654bp; location=Sequence derived from: chr3:33848577..33849985- (Citrus maxima ATGGATCCTCTGCTACAACTAGTTTTTGTTTGGAAGAAAGAAATGAAAGG ATCATTTGCTACTTTTGCCATTATAGGATTTGGCTATGGTCATAGAACTG GTGACTTCAAGATCTTACTTACTGTCCACGCTAGAGAAGTTGCTTCTGAA CAATTACACCGCGAGCACAATGAGATTCAAGTTCATTCACTGAAAAACAT TCAACCTAATATTCCATGTATGCCATGCCTGAGTTCGAATTCGACTGTGC ACTTAAGTGGAGCTCAACGTTGGCTGGCAGTGAGAAAAGAGAGAAATGGT ACTGATAAAAAAATTATCAGAGAAATATCAGTTGGGGTACTCGAAAAATC AATTGCACTGTTTGTTTCAAGTCATAGTGAAGATAGCAGAACAGGACTTG GTATTTGTAATGTGTATGTGATGATGGAGAATATAGGATCAGTAGAGCAT TGGATTAATCTGCTCACAGTTGATTTAAGAGCACAATTTGCATGGCAGTA CTTAGGTTTCAGAGCAAATGGTGAAGTAATGCTGATAAATGATGATGGAG ACCTGGTTTTGTGTGATCATAAAACTCAGGAAATTGTACAATTTGGAAGC AGTAATTGGGTTGCTAATGCCGTCACATATACAGAAAGCCTAGTTTCACC GTAG back to top