Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
CMJ_chr3_011700.3_cmj_v1 CMJ_chr3_011700.3_cmj_v1 Citrus maxima polypeptide CMJ_chr3_011700.3_cmj_v1 CMJ_chr3_011700.3_cmj_v1-protein Citrus maxima polypeptide
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CMJ_chr3_011700.3.exon4 CMJ_chr3_011700.3.exon4_cmj_v1 Citrus maxima exon CMJ_chr3_011700.3.exon3 CMJ_chr3_011700.3.exon3_cmj_v1 Citrus maxima exon CMJ_chr3_011700.3.exon2 CMJ_chr3_011700.3.exon2_cmj_v1 Citrus maxima exon CMJ_chr3_011700.3.exon1 CMJ_chr3_011700.3.exon1_cmj_v1 Citrus maxima exon
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CMJ_chr3_011700.3.utr3.2 CMJ_chr3_011700.3.utr3.2_cmj_v1 Citrus maxima three_prime_UTR CMJ_chr3_011700.3.utr3.1 CMJ_chr3_011700.3.utr3.1_cmj_v1 Citrus maxima three_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CMJ_chr3_011700.3.cds.3 CMJ_chr3_011700.3.cds.3_cmj_v1 Citrus maxima CDS CMJ_chr3_011700.3.cds.2 CMJ_chr3_011700.3.cds.2_cmj_v1 Citrus maxima CDS CMJ_chr3_011700.3.cds.1 CMJ_chr3_011700.3.cds.1_cmj_v1 Citrus maxima CDS
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CMJ_chr3_011700.3.utr5.1 CMJ_chr3_011700.3.utr5.1_cmj_v1 Citrus maxima five_prime_UTR
Homology
BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match:
A0A2H5PPA4|A0A2H5PPA4_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_154820 PE=4 SV=1)
HSP 1 Score: 270.781 bits (691), Expect = 8.033e-91
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQG 133
MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQG
Sbjct: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQG 133
BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match:
V4SZJ1|V4SZJ1_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002536mg PE=4 SV=1)
HSP 1 Score: 269.626 bits (688), Expect = 2.485e-90
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0
Query: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQG 133
MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMP+RQGGLPAADTRETDINADSYDQG
Sbjct: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINADSYDQG 133
BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match:
A0A067DE25|A0A067DE25_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028991mg PE=4 SV=1)
HSP 1 Score: 268.085 bits (684), Expect = 9.679e-90
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 0
Query: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQG 133
MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMP+RQGGLPAADTRETDINA+SYDQG
Sbjct: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINANSYDQG 133
BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match:
V4SF52|V4SF52_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002536mg PE=4 SV=1)
HSP 1 Score: 261.151 bits (666), Expect = 7.745e-87
Identity = 131/142 (92.25%), Postives = 132/142 (92.96%), Query Frame = 0
Query: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPIL---------TNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQG 133
MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPI TNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMP+RQGGLPAADTRETDINADSYDQG
Sbjct: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPIFNLVLQCIYRTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINADSYDQG 142
BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match:
A0A067DQ03|A0A067DQ03_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028991mg PE=4 SV=1)
HSP 1 Score: 259.61 bits (662), Expect = 2.475e-86
Identity = 130/142 (91.55%), Postives = 132/142 (92.96%), Query Frame = 0
Query: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPIL---------TNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQG 133
MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPI TNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMP+RQGGLPAADTRETDINA+SYDQG
Sbjct: 1 MANKQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQEQQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPIFNLVLQCIYRTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPRRQGGLPAADTRETDINANSYDQG 142
BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match:
A0A5D2U252|A0A5D2U252_GOSMU (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D08G257200v1 PE=4 SV=1)
HSP 1 Score: 145.206 bits (365), Expect = 6.741e-42
Identity = 77/134 (57.46%), Postives = 96/134 (71.64%), Query Frame = 0
Query: 4 KQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQE-QQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQGTTL 136
KQ L+ DAW+REA+EA KLVE+I+ RV NK+ Q + DI ARSKLL+VG+K+DRLESLLRNPPSKPILTNED++ RWKMLSD+QLR KALA+RLYA+ P R G + + + Y QG +L
Sbjct: 3 KQALMADAWIREAEEALKLVEDIENRVNNKNPSLQHHGNCVIDIAARSKLLDVGIKIDRLESLLRNPPSKPILTNEDIDYRWKMLSDMQLRTKALALRLYAL--PTSSRPGNSTHGNHNDMNKIITDYIQGRSL 134
BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match:
A0A6J1A8X1|A0A6J1A8X1_9ROSI (uncharacterized protein LOC110415866 isoform X2 OS=Herrania umbratica OX=108875 GN=LOC110415866 PE=4 SV=1)
HSP 1 Score: 146.747 bits (369), Expect = 9.537e-42
Identity = 78/133 (58.65%), Postives = 97/133 (72.93%), Query Frame = 0
Query: 4 KQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQE-QQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQGTT 135
KQ L+ DAW+REAQEA KLVE+I+ RVKNK+ + Q++ DI ARSKLLE G+KLDRLESLLRNPPSKPILTNEDL+ RW MLS++QLR KALA+ LYA+ P R G L + + + N + +Q T
Sbjct: 3 KQALMGDAWIREAQEASKLVEDIETRVKNKNPSLKHQENRLVDITARSKLLEAGIKLDRLESLLRNPPSKPILTNEDLDYRWNMLSEMQLRTKALALSLYAL--PTSSRPGCLTPGNAKAINTNVNDCEQDQT 133
BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match:
A0A061F374|A0A061F374_THECC (Syntaxin of plants 52, putative isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_026395 PE=4 SV=1)
HSP 1 Score: 145.976 bits (367), Expect = 2.066e-41
Identity = 79/133 (59.40%), Postives = 96/133 (72.18%), Query Frame = 0
Query: 4 KQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQE-QQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMPYPMPKRQGGLPAADTRETDINADSYDQGTT 135
KQ L+ DAW+REAQEA KLVE+I+ RVKNK+ + Q++ DI ARSKLLE G+KLDRLESLLRNPPSKPILTNEDL+ RWKMLS++QLR KALA+ LYA+ P R G L + + N +Q T
Sbjct: 3 KQALMGDAWIREAQEASKLVEDIETRVKNKNPSLKHQENRLVDITARSKLLEAGIKLDRLESLLRNPPSKPILTNEDLDYRWKMLSELQLRTKALALSLYAL--PTSSRPGCLTPENAEAINTNVSDCEQDQT 133
BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match:
A0A7J9L5Y6|A0A7J9L5Y6_GOSSC (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_022175 PE=4 SV=1)
HSP 1 Score: 145.976 bits (367), Expect = 4.773e-41
Identity = 71/103 (68.93%), Postives = 86/103 (83.50%), Query Frame = 0
Query: 4 KQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQE-QQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMP 105
KQ L+ DAW+REA+EA KLVE+I+ RV NK+ Q + DI ARSKLL+VG+K+DRLESLLRNPPSKPILTNED++ RWKMLSD+QLR KALA+RLYA+P
Sbjct: 3 KQALMADAWIREAEEASKLVEDIENRVNNKNPSLQHHGNCVIDIAARSKLLDVGIKIDRLESLLRNPPSKPILTNEDIDYRWKMLSDMQLRTKALALRLYALP 105
BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Match:
A0A1U8IQC5|A0A1U8IQC5_GOSHI (uncharacterized protein LOC107899148 OS=Gossypium hirsutum OX=3635 GN=LOC107899148 PE=4 SV=1)
HSP 1 Score: 144.05 bits (362), Expect = 1.001e-40
Identity = 71/103 (68.93%), Postives = 86/103 (83.50%), Query Frame = 0
Query: 4 KQYLVVDAWLREAQEAEKLVEEIDGRVKNKSQE-QQQQSLSDDIIARSKLLEVGVKLDRLESLLRNPPSKPILTNEDLESRWKMLSDIQLRMKALAVRLYAMP 105
KQ L+ DAW+REA+EA KLVE+I+ RV NK+ Q + DI ARSKLL+VG+K+DRLESLLRNPPSKPILTNED++ RWKMLSD+QLR KALA+RLYA+P
Sbjct: 3 KQALMADAWIREAEEALKLVEDIENRVNNKNPSLQHHGNCVIDIAARSKLLDVGIKIDRLESLLRNPPSKPILTNEDIDYRWKMLSDMQLRTKALALRLYALP 105
The following BLAST results are available for this feature:
BLAST of CMJ_chr3_011700.3 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL )
Total hits: 10
50 100 150 200 250 300 350 400 Expect = 8.03e-91 / Id = 100.00 Expect = 2.49e-90 / Id = 99.25 Expect = 9.68e-90 / Id = 98.50 Expect = 7.75e-87 / Id = 92.25 Expect = 2.48e-86 / Id = 91.55 Expect = 6.74e-42 / Id = 57.46 Expect = 9.54e-42 / Id = 58.65 Expect = 2.07e-41 / Id = 59.40 Expect = 4.77e-41 / Id = 68.93 Expect = 1.00e-40 / Id = 68.93 Sequence A0A2H5PPA4|A0A2H5PPA4_CITUN V4SZJ1|V4SZJ1_CITCL A0A067DE25|A0A067DE25_CITSI V4SF52|V4SF52_CITCL A0A067DQ03|A0A067DQ03_CITSI A0A5D2U252|A0A5D2U252_GOSMU A0A6J1A8X1|A0A6J1A8X1_9ROSI A0A061F374|A0A061F374_THECC A0A7J9L5Y6|A0A7J9L5Y6_GOSSC A0A1U8IQC5|A0A1U8IQC5_GOSHI back to top
Sequences
The
following sequences are available for this feature:
mRNA sequence
>CMJ_chr3_011700.3_cmj_v1 ID=CMJ_chr3_011700.3_cmj_v1; Name=CMJ_chr3_011700.3; organism=Citrus maxima; type=mRNA; length=411bp back to top protein sequence of CMJ_chr3_011700.3_cmj_v1
>CMJ_chr3_011700.3_cmj_v1 ID=CMJ_chr3_011700.3_cmj_v1; Name=CMJ_chr3_011700.3_cmj_v1; organism=Citrus maxima; type=polypeptide; length=137bp back to top mRNA from alignment at chr3:29838512..29842433-
Legend: exon five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=3922bp; location=Sequence derived from: chr3:29838512..29842433- (Citrus maximaCGATTACAAATTCTTAGCAAATTTTAAGTTGAATTTGCTTCTCATGTGCA
AAATGACTCCATCCCACACGATGAAGGCTAAAGAACAAAATGAAAAAATC
ATTTTCATTGCCGAATCTATTAGCAGCTGGAAATTAGTTATGGTAACTGC
ACATTAAAATATCATACCACAAATATGTCTTGAGGATTTTACAGCTTAAG
AAACTCCTTAATATGTATGCATGTGTGTGTGTGTGTATATACATATAAAT
CGAAATAATTAATAATTAGTTACTGGACATTAATTTATGTAGCAAGCACA
ACAGAGACAGAGATTCATGCAACAACTGTTGTTTGTTTGTTTGCGCTTTG
TTCATTTATCTTACAAGTACAGAGTCAGACAGTGAGTTCTGTTTTGTG AT
GGCCAATAAGCAGTATCTAGTTGTAGATGCATGGTTAAGAGAAGCTCAAG
AGGCTGAAAAGTTGGTGGAAGAGATAGATGGCAGAGTCAAGAACAAAAGC
CAAGAACAGCAGCAACAAAGTCTCAGCGATGACATAATTGCTAGATCTAA
GCTTTTGGAAGTTGGAGTAAAGCTTGATCGCCTTGAATCACTTCTTCGTA
ACCCACCTTCAAAACCCATCTT AACGAATGA
AGATTTGGAATCGCGATGGAAAATGCTGTCGGATATCCAGCTGAGAATGA
AAGCACTTGCCGTCAGACTCTATGCAATGCCATATCCGATGCCAAAGAG GCAAGGAGGGTTACCTGCTGCAGAT
ACCAGGGAAACAGATATAAATGCTGACAGCTATGACCAAGGTACCACTCT
ATAG TCACAACAGTTACGGATACAAATATTCTATCAAATGAATTGCAGCC
TATGTGAGAAAAATACATAGAGCATCAAGAGGGTTACTTTTCTGGAAAGA
ACATAAGGCATGTAGAAGGGGCTTAGATCCTGTAATCATTCCCTTCATAA
GTACACAATGCCCATTAATTCACTTCTGTGTTGCTAAAGAAAAGAGAAAG
ACTTGAAATTCTTATAAAGTGGTAAAGAGCTTGCTGTGTTGTGCTGCAGG
TCAAATAAGGGCCTCATTCGCCAAAGATGAGTCAGAGCTGCTGCAACCTC
TTGTGGTAAGTCTCTGAAGCTAAGCTGCTTAAGTTGTTGAATGTAAAATT
GTTACTGTAAGTCATCCGACCATCCCAAATGATGTTTCTGCCCCATGCAA
TCAGAAGATGCTACCCAAAGCCATATGCAGGCATTGAGTTTAGATATAAC
TGAACTATTTTATCACTCAAGCATATTCCTGACTTCCATCTTTTTGACCT
TATTTGATTGAATGAGCAGGCCATACGACGAAGTTCTTTCATTTCAATGA
CTTTGCTATGGAAGATTTGCTGGACCATTGGCATAATTCTTGGAGCCGCT
GCATTTCTGTTTATCTTGTTTATCCTCTGTGCAGTCATATAAATGCATAC
TCAGCCTATTATTATTACATGTTTAATTCCCATTGTAAAGTTCCATTATT
GAATCCTAGTCTACTATAAATACCCTGCCATGTGTTTTGAGCCAATTTTG
TGGAGAGTGATTTTGTAAAGATTGTTTACTGAATTTTGGGGTCCTTTTTC
TGCTGGGAAAGATTCACCATTGTCAAAAAAAATGGCACCTTACATTTCTT
TTTCAAAGTGACTCTGAAACACAAGTGGGATGAGTTGTACCGGTTTAACA
AACTCTATCAGATTAATGTAATTTCTGGTAAGAGCTACAATAGCTTTTTA
GTTTTTACCTCAAATGTAACTCTACGTATTGAATAACCTTTACACTGAGG
CTGTAGCTCATCATTATCAATCAGATTTCTTGTTGCCTTATTTTATGCAA
CTTTTCATCTCATAGTCTGGCATGAACTTCACATTTCCCCACCGACGAAA
ATAAATCCCATTCTGTTTAGATCATAGAACAGAGATGGACCACAAATATA
AAACAAACAACAATCATGGTACTGTCAATCAAATGATACAATAATCTGAA
ATTGTAGCTTGATGTACAAAGGCAGCAGAAAATGTAGGAGAGCAATAAAT
ACTTAGAAGAGTACATACAAGTATTGTTACTGTCTGAAGAGGGTTCCCTC
TTACACTTGTAAAAGGACAGAAAATAACATGACACCATAAACTAAAATAG
TTTAAACAACCTTTCGGCTGCAAATAATTGAAATGCTGCTACAAATAGTA
ATCTGTAATTCACCACTGTCTAAGCAAAGCAACAACAGCAACAGTTATTC
TCCCTGCTCTCTATATTCTTGTTCTTTCACCTACCATGAAGCACTTTCTT
CCCTAATATTTCAAATGGGGTTGCTGCAATCCCTCTTCTCTCCATTGAAG
AAGCTTTGGTTTCGCCTGCATTCGACTCAGAGAAAGA ATAAAGGGATATACATTTTGTATGATGATGTGAAATCTTGC
CAATGTGAAGATGTGCATGTCCTCTGGTCAATCCTTGTTGAGTCGCAGAT
ACCCTCCATTGCATCACAAAACACTGAAGTCTAGCTTTGAAGATGAAAAT
TAAATTTTCTTGTTACATATGCACATATAATTAATAAATCATTATCTTTC
TTTCTTGTGAAATCTTAGCTACCATGTTAAGCACATTGATGTATTCTAGA
AGGTGTAATGTGTTGAAGTAAGTTGCTTTGTCTATTTTGTGGCAGTTGGG
ACTTGGGGTTGCCATTTTTTTTTTTTTTGAACTTTTCAATGCTGTGATGA
CTGAATAGACATATATATTGTGGAGGTTGATATAATTTGATCTGAAATTG
ATGGCAGAACTTACACATGTTCTTATTGTATCTTTCAAATAATTCTAGGA
TTCATTTCATTGATAGTGATGGTAAGTCAAATTTCAATTCTAGTTTAAGC
AATCAAACAGGAGATGAGAGGC back to top Coding sequence (CDS) from alignment at chr3:29838512..29842433-
>CMJ_chr3_011700.3_cmj_v1 ID=CMJ_chr3_011700.3_cmj_v1; Name=CMJ_chr3_011700.3; organism=Citrus maxima; type=CDS; length=411bp; location=Sequence derived from: chr3:29838512..29842433- (Citrus maxima back to top
