CMJ_chr2_006310.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Match: A0A2H5N2C5|A0A2H5N2C5_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_010290 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 3.006e-24 Identity = 55/93 (59.14%), Postives = 55/93 (59.14%), Query Frame = 0 Query: 32 GQYAEKWNNQWKSVSNPARFIE--------------------------------------CTRDINSRDCNDCLTGALGDLKACCGAREAGII 86
GQYAEKWNNQWKSVSNPARFIE CTRDINSRDCNDCLTGALGDLKACCGAREAGII
Sbjct: 2253 GQYAEKWNNQWKSVSNPARFIEVLTYLMTNLSIEASSDPAMFAVGEVKFPKRKTIYGLVQCTRDINSRDCNDCLTGALGDLKACCGAREAGII 2345
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Match: A0A2H5N1V3|A0A2H5N1V3_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_010290 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 3.035e-24 Identity = 55/93 (59.14%), Postives = 55/93 (59.14%), Query Frame = 0 Query: 32 GQYAEKWNNQWKSVSNPARFIE--------------------------------------CTRDINSRDCNDCLTGALGDLKACCGAREAGII 86
GQYAEKWNNQWKSVSNPARFIE CTRDINSRDCNDCLTGALGDLKACCGAREAGII
Sbjct: 2234 GQYAEKWNNQWKSVSNPARFIEVLTYLMTNLSIEASSDPAMFAVGEVKFPKRKTIYGLVQCTRDINSRDCNDCLTGALGDLKACCGAREAGII 2326
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Match: A0A2H5N2S4|A0A2H5N2S4_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_010290 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 3.064e-24 Identity = 55/93 (59.14%), Postives = 55/93 (59.14%), Query Frame = 0 Query: 32 GQYAEKWNNQWKSVSNPARFIE--------------------------------------CTRDINSRDCNDCLTGALGDLKACCGAREAGII 86
GQYAEKWNNQWKSVSNPARFIE CTRDINSRDCNDCLTGALGDLKACCGAREAGII
Sbjct: 2195 GQYAEKWNNQWKSVSNPARFIEVLTYLMTNLSIEASSDPAMFAVGEVKFPKRKTIYGLVQCTRDINSRDCNDCLTGALGDLKACCGAREAGII 2287
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Match: A0A2H5N3Q9|A0A2H5N3Q9_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_010290 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 3.186e-24 Identity = 55/93 (59.14%), Postives = 55/93 (59.14%), Query Frame = 0 Query: 32 GQYAEKWNNQWKSVSNPARFIE--------------------------------------CTRDINSRDCNDCLTGALGDLKACCGAREAGII 86
GQYAEKWNNQWKSVSNPARFIE CTRDINSRDCNDCLTGALGDLKACCGAREAGII
Sbjct: 2234 GQYAEKWNNQWKSVSNPARFIEVLTYLMTNLSIEASSDPAMFAVGEVKFPKRKTIYGLVQCTRDINSRDCNDCLTGALGDLKACCGAREAGII 2326
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Match: A0A067GJH6|A0A067GJH6_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g007239mg PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 3.193e-24 Identity = 55/93 (59.14%), Postives = 55/93 (59.14%), Query Frame = 0 Query: 32 GQYAEKWNNQWKSVSNPARFIE--------------------------------------CTRDINSRDCNDCLTGALGDLKACCGAREAGII 86
GQYAEKWNNQWKSVSNPARFIE CTRDINSRDCNDCLTGALGDLKACCGAREAGII
Sbjct: 125 GQYAEKWNNQWKSVSNPARFIEVLTYLMTNLSIEASSDPAMFAVGEVKFPKRKTIYGLVQCTRDINSRDCNDCLTGALGDLKACCGAREAGII 217
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Match: A0A2H5N1W8|A0A2H5N1W8_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_010290 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 3.409e-24 Identity = 55/93 (59.14%), Postives = 55/93 (59.14%), Query Frame = 0 Query: 32 GQYAEKWNNQWKSVSNPARFIE--------------------------------------CTRDINSRDCNDCLTGALGDLKACCGAREAGII 86
GQYAEKWNNQWKSVSNPARFIE CTRDINSRDCNDCLTGALGDLKACCGAREAGII
Sbjct: 2234 GQYAEKWNNQWKSVSNPARFIEVLTYLMTNLSIEASSDPAMFAVGEVKFPKRKTIYGLVQCTRDINSRDCNDCLTGALGDLKACCGAREAGII 2326
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Match: A0A067EJT5|A0A067EJT5_CITSI (Gnk2-homologous domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g043615mg PE=4 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 8.458e-16 Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 0 Query: 33 QYAEKWNNQWKSVSNPARFIECTRDINSRDCNDCLTGALGDLKACCGAREAGII 86
+YA++WNNQWKS+ ++CTRDI +R+CN C TG LG+LKACCG+R+A I+
Sbjct: 60 RYAKEWNNQWKSLGTIYGLVQCTRDITARECNYCWTGGLGNLKACCGSRQAVIL 113
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Match: A0A2H5QTS4|A0A2H5QTS4_CITUN (Gnk2-homologous domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_260960 PE=4 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.705e-15 Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 0 Query: 33 QYAEKWNNQWKSVSNPARFIECTRDINSRDCNDCLTGALGDLKACCGAREAGII 86
+YA++WNNQWKS+ ++CTRDI +R+CN C TG LG+LKACCG+R+A I+
Sbjct: 141 RYAKEWNNQWKSMGTTYGLVQCTRDITARECNYCWTGGLGNLKACCGSRQAVIL 194 The following BLAST results are available for this feature:
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 8 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr2_006310.1_cmj_v1 ID=CMJ_chr2_006310.1_cmj_v1; Name=CMJ_chr2_006310.1; organism=Citrus maxima; type=mRNA; length=309bpback to top protein sequence of CMJ_chr2_006310.1_cmj_v1 >CMJ_chr2_006310.1_cmj_v1 ID=CMJ_chr2_006310.1_cmj_v1; Name=CMJ_chr2_006310.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=103bpback to top mRNA from alignment at chr2:3883740..3884811- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1072bp; location=Sequence derived from: chr2:3883740..3884811- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr2:3883740..3884811- >CMJ_chr2_006310.1_cmj_v1 ID=CMJ_chr2_006310.1_cmj_v1; Name=CMJ_chr2_006310.1; organism=Citrus maxima; type=CDS; length=309bp; location=Sequence derived from: chr2:3883740..3884811- (Citrus maximaback to top |