Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr2_006310.1.exon5 | CMJ_chr2_006310.1.exon5_cmj_v1 | Citrus maxima | exon |
| CMJ_chr2_006310.1.exon4 | CMJ_chr2_006310.1.exon4_cmj_v1 | Citrus maxima | exon |
| CMJ_chr2_006310.1.exon3 | CMJ_chr2_006310.1.exon3_cmj_v1 | Citrus maxima | exon |
| CMJ_chr2_006310.1.exon2 | CMJ_chr2_006310.1.exon2_cmj_v1 | Citrus maxima | exon |
| CMJ_chr2_006310.1.exon1 | CMJ_chr2_006310.1.exon1_cmj_v1 | Citrus maxima | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr2_006310.1.cds.5 | CMJ_chr2_006310.1.cds.5_cmj_v1 | Citrus maxima | CDS |
| CMJ_chr2_006310.1.cds.4 | CMJ_chr2_006310.1.cds.4_cmj_v1 | Citrus maxima | CDS |
| CMJ_chr2_006310.1.cds.3 | CMJ_chr2_006310.1.cds.3_cmj_v1 | Citrus maxima | CDS |
| CMJ_chr2_006310.1.cds.2 | CMJ_chr2_006310.1.cds.2_cmj_v1 | Citrus maxima | CDS |
| CMJ_chr2_006310.1.cds.1 | CMJ_chr2_006310.1.cds.1_cmj_v1 | Citrus maxima | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr2_006310.1_cmj_v1 | CMJ_chr2_006310.1_cmj_v1 | Citrus maxima | polypeptide |
| CMJ_chr2_006310.1_cmj_v1 | CMJ_chr2_006310.1_cmj_v1-protein | Citrus maxima | polypeptide |
Homology
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Match:
A0A2H5N2C5|A0A2H5N2C5_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_010290 PE=4 SV=1)
HSP 1 Score: 105.916 bits (263), Expect = 3.006e-24
Identity = 55/93 (59.14%), Postives = 55/93 (59.14%), Query Frame = 0
Query: 32 GQYAEKWNNQWKSVSNPARFIE--------------------------------------CTRDINSRDCNDCLTGALGDLKACCGAREAGII 86
GQYAEKWNNQWKSVSNPARFIE CTRDINSRDCNDCLTGALGDLKACCGAREAGII
Sbjct: 2253 GQYAEKWNNQWKSVSNPARFIEVLTYLMTNLSIEASSDPAMFAVGEVKFPKRKTIYGLVQCTRDINSRDCNDCLTGALGDLKACCGAREAGII 2345
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Match:
A0A2H5N1V3|A0A2H5N1V3_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_010290 PE=4 SV=1)
HSP 1 Score: 105.916 bits (263), Expect = 3.035e-24
Identity = 55/93 (59.14%), Postives = 55/93 (59.14%), Query Frame = 0
Query: 32 GQYAEKWNNQWKSVSNPARFIE--------------------------------------CTRDINSRDCNDCLTGALGDLKACCGAREAGII 86
GQYAEKWNNQWKSVSNPARFIE CTRDINSRDCNDCLTGALGDLKACCGAREAGII
Sbjct: 2234 GQYAEKWNNQWKSVSNPARFIEVLTYLMTNLSIEASSDPAMFAVGEVKFPKRKTIYGLVQCTRDINSRDCNDCLTGALGDLKACCGAREAGII 2326
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Match:
A0A2H5N2S4|A0A2H5N2S4_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_010290 PE=4 SV=1)
HSP 1 Score: 105.916 bits (263), Expect = 3.064e-24
Identity = 55/93 (59.14%), Postives = 55/93 (59.14%), Query Frame = 0
Query: 32 GQYAEKWNNQWKSVSNPARFIE--------------------------------------CTRDINSRDCNDCLTGALGDLKACCGAREAGII 86
GQYAEKWNNQWKSVSNPARFIE CTRDINSRDCNDCLTGALGDLKACCGAREAGII
Sbjct: 2195 GQYAEKWNNQWKSVSNPARFIEVLTYLMTNLSIEASSDPAMFAVGEVKFPKRKTIYGLVQCTRDINSRDCNDCLTGALGDLKACCGAREAGII 2287
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Match:
A0A2H5N3Q9|A0A2H5N3Q9_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_010290 PE=4 SV=1)
HSP 1 Score: 105.916 bits (263), Expect = 3.186e-24
Identity = 55/93 (59.14%), Postives = 55/93 (59.14%), Query Frame = 0
Query: 32 GQYAEKWNNQWKSVSNPARFIE--------------------------------------CTRDINSRDCNDCLTGALGDLKACCGAREAGII 86
GQYAEKWNNQWKSVSNPARFIE CTRDINSRDCNDCLTGALGDLKACCGAREAGII
Sbjct: 2234 GQYAEKWNNQWKSVSNPARFIEVLTYLMTNLSIEASSDPAMFAVGEVKFPKRKTIYGLVQCTRDINSRDCNDCLTGALGDLKACCGAREAGII 2326
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Match:
A0A067GJH6|A0A067GJH6_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g007239mg PE=4 SV=1)
HSP 1 Score: 105.916 bits (263), Expect = 3.193e-24
Identity = 55/93 (59.14%), Postives = 55/93 (59.14%), Query Frame = 0
Query: 32 GQYAEKWNNQWKSVSNPARFIE--------------------------------------CTRDINSRDCNDCLTGALGDLKACCGAREAGII 86
GQYAEKWNNQWKSVSNPARFIE CTRDINSRDCNDCLTGALGDLKACCGAREAGII
Sbjct: 125 GQYAEKWNNQWKSVSNPARFIEVLTYLMTNLSIEASSDPAMFAVGEVKFPKRKTIYGLVQCTRDINSRDCNDCLTGALGDLKACCGAREAGII 217
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Match:
A0A2H5N1W8|A0A2H5N1W8_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_010290 PE=4 SV=1)
HSP 1 Score: 105.916 bits (263), Expect = 3.409e-24
Identity = 55/93 (59.14%), Postives = 55/93 (59.14%), Query Frame = 0
Query: 32 GQYAEKWNNQWKSVSNPARFIE--------------------------------------CTRDINSRDCNDCLTGALGDLKACCGAREAGII 86
GQYAEKWNNQWKSVSNPARFIE CTRDINSRDCNDCLTGALGDLKACCGAREAGII
Sbjct: 2234 GQYAEKWNNQWKSVSNPARFIEVLTYLMTNLSIEASSDPAMFAVGEVKFPKRKTIYGLVQCTRDINSRDCNDCLTGALGDLKACCGAREAGII 2326
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Match:
A0A067EJT5|A0A067EJT5_CITSI (Gnk2-homologous domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g043615mg PE=4 SV=1)
HSP 1 Score: 78.1814 bits (191), Expect = 8.458e-16
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 0
Query: 33 QYAEKWNNQWKSVSNPARFIECTRDINSRDCNDCLTGALGDLKACCGAREAGII 86
+YA++WNNQWKS+ ++CTRDI +R+CN C TG LG+LKACCG+R+A I+
Sbjct: 60 RYAKEWNNQWKSLGTIYGLVQCTRDITARECNYCWTGGLGNLKACCGSRQAVIL 113
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Match:
A0A2H5QTS4|A0A2H5QTS4_CITUN (Gnk2-homologous domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_260960 PE=4 SV=1)
HSP 1 Score: 78.5666 bits (192), Expect = 2.705e-15
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 0
Query: 33 QYAEKWNNQWKSVSNPARFIECTRDINSRDCNDCLTGALGDLKACCGAREAGII 86
+YA++WNNQWKS+ ++CTRDI +R+CN C TG LG+LKACCG+R+A I+
Sbjct: 141 RYAKEWNNQWKSMGTTYGLVQCTRDITARECNYCWTGGLGNLKACCGSRQAVIL 194
The following BLAST results are available for this feature:
BLAST of CMJ_chr2_006310.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 8
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>CMJ_chr2_006310.1_cmj_v1 ID=CMJ_chr2_006310.1_cmj_v1; Name=CMJ_chr2_006310.1; organism=Citrus maxima; type=mRNA; length=309bp
ATGGCAAAAACCAGGCAAATTCTTCCACCAATCAATTACCAGCCATTGGC
CTCCGATAGGCTAAATCCCCTTGTGCTTCCAAATAAGGAAGATGGACAGT
ACGCAGAAAAGTGGAATAATCAGTGGAAGAGTGTGTCCAATCCTGCTCGT
TTCATCGAATGTACCAGGGACATTAATTCCCGTGACTGCAACGACTGTTT
GACTGGCGCCTTGGGAGACCTCAAAGCATGCTGTGGTGCTCGGGAGGCTG
GGATTATCTTTGCTTTTGCTGTCACTGCAACAAAATTGAAGCATTTAACA
AAATCTTAA
back to topprotein sequence of CMJ_chr2_006310.1_cmj_v1
>CMJ_chr2_006310.1_cmj_v1 ID=CMJ_chr2_006310.1_cmj_v1; Name=CMJ_chr2_006310.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=103bp
MAKTRQILPPINYQPLASDRLNPLVLPNKEDGQYAEKWNNQWKSVSNPAR
FIECTRDINSRDCNDCLTGALGDLKACCGAREAGIIFAFAVTATKLKHLT
KS*
back to topmRNA from alignment at chr2:3883740..3884811-
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=1072bp; location=Sequence derived from: chr2:3883740..3884811- (Citrus maxima
ATGGCAAAAACCAGGCAAATTCTTCCACCAATCAATTACCAGGTAATTTA
GGTCTGCTGAACTTTCAATCTCTTGCGTTGTGAATGATCAGGAAGTTTCT
ATTCCATAATGTTCAAACCTCGCCTAATTATTGTCAACTAAAAAAAAAAA
AATGTTATGCAGCCATTGGCCTCCGATAGGCTAAATCCCCTTGTGCTTCC
AAATAAGGAAGATGGTTAAAAAAATATAATTTCAGCTATGCTTCTCCTAG
TCGTACAATTCTTCATGCTCTCTATCTTTACTGATGCAAATCCTCTCGAT
ATAGCTTGCTCCAATACAAGTTATGCTCCTAACAGCCCGTTTGAAAGTAA
CCTAAAGCTCCTTCTAGAGTCAATAGCTACCAATACTTCACAAGGCTTCT
ACAACTTGTCCATCGGAGATGACCCTAATCGAGTTTTTGGGCGAGCACTT
TGTCGAGGGGATGTTAACGGCACAGTTTGTCAGAATTGCCTCGAAAACGC
AAGACATGAAATCTTGAAAAATTGCAAGACTGCTGAAGAGGCAATCATAT
GGTATGAATTATGTCAAATTCAATACTCATACCGGAAATTTTTAGTGATG
GTTTATGCAGGACAGTACGCAGAAAAGTGGAATAATCAGTGGAAGAGTGT
GTCCAATCCTGCTCGTTTCATCGAAGTATTAACTTACTTAATGACTAACC
TCTCAATTGAGGCCTCATCTGATCCGGCGATGTTTGCGGTCGGTGAAGTT
AAATTTCCAAAGCGGAAAACTATATATGGGCTTGTGCAGTGTACCAGGGA
CATTAATTCCCGTGACTGCAACGACTGTTTGACTGGCGCCTTGGGAGACC
TCAAAGCATGCTGTGGTGCTCGGGAGGCTGGGATTATCGTAAATGAGAAT
TGTAACTTGAGATTTCAGCTCTCCCTCTTCTATAATGCTTCAACACGTAT
AGCACTAACATACCCAACTTCCACAGGTGAGATCGTTGACTTTAATCAAT
CATATATTGTTCGTTTACTAGTTTGCTTTTGCTGTCACTGCAACAAAATT
GAAGCATTTAACAAAATCTTAA
back to topCoding sequence (CDS) from alignment at chr2:3883740..3884811-
>CMJ_chr2_006310.1_cmj_v1 ID=CMJ_chr2_006310.1_cmj_v1; Name=CMJ_chr2_006310.1; organism=Citrus maxima; type=CDS; length=309bp; location=Sequence derived from: chr2:3883740..3884811- (Citrus maxima
ATGGCAAAAACCAGGCAAATTCTTCCACCAATCAATTACCAGCCATTGGC
CTCCGATAGGCTAAATCCCCTTGTGCTTCCAAATAAGGAAGATGGACAGT
ACGCAGAAAAGTGGAATAATCAGTGGAAGAGTGTGTCCAATCCTGCTCGT
TTCATCGAATGTACCAGGGACATTAATTCCCGTGACTGCAACGACTGTTT
GACTGGCGCCTTGGGAGACCTCAAAGCATGCTGTGGTGCTCGGGAGGCTG
GGATTATCTTTGCTTTTGCTGTCACTGCAACAAAATTGAAGCATTTAACA
AAATCTTAA
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