Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| PAC:20816293.five_prime_UTR.1 | PAC:20816293.five_prime_UTR.1 | Citrus clementina | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| PAC:20816293.three_prime_UTR.1 | PAC:20816293.three_prime_UTR.1 | Citrus clementina | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| PAC:20816293 | PAC:20816293 | Citrus clementina | polypeptide |
InterPro
Analysis Name: InterProScan analysis of Citrus clementina v1.0 transcripts
Date Performed: 2012-12-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | SEG | seg | seg | coord: 94..111
score: NAcoord: 195..200
score |
Sequences
The
following sequences are available for this feature:
mRNA sequence
>PAC:20816293 ID=PAC:20816293; Name=Ciclev10016664m; organism=Citrus clementina; type=mRNA; length=1131bp
GGATCTGCTTAAATCATCTTGCACAGTAACGCACTTGAAACTCACAGGTA
GCAGTGACAATATCTTCAAAAACACAATAACAAGCTCAAAGATTCTGCCA
TGGATAAGTAAGTATTTGATCTTGATCTCTCTCGTTAAGTTCATCGCCGT
ATACAAGTTATTTCATGGAATCTAACATTTATTTTTTCCATCATTTTGAA
TTTTTTTCTCAGAGAAAAACTTGAGGCTATGGCAATCAGTCAAAAGGCTT
TAGATGAACCAGTGAACTTGCTATCAAGCTCCAAAAAAGAGGACATTTAC
GATGACATAATAGACGTCCATCTAAAAGCTCTAGACGATCTGGTCAACGT
CAACTCCCTCTTCACAATAGCAGTATTTGTGGGATTATCCTTAGCTTCCC
GAAACCAACGGTCTCTGGATGGCCGGCCCGAGTGCGACCCAGACGTTGGC
CTCGGGAAAAGACTCATCTTATACGAAGTTATATCATTCGCCTGCTTCCT
TCTGTCGAGTCTATGCTCCAAGTCACTCAAAGTACTCATCAACTTGGAAA
AAATCAAGAGAAAGATCAAAGTCAAACGGACGCCGAAGCTAGAGGGGCTG
TTTAAGAACATTCTTCTGTCGGGGACCTGGAGGCTATTCTTGCTGGTGCT
ATCGATTGTGGCGTTGTTTATTGGGATTGTTTTCCTGACGCTGTCAATGG
TGTATGTGATTCAGATAAGAGTGGGGAAGCTGTCCTGTGGGAGTGACTAT
GCTTTGACTTCGGTGGCTTCACTGTGTGGTATTGTTCTTCTATCTCTCCT
GCTTTATGCGCCATCCATGGTGTTCGTTGTAATTGCAACTGCCCCAAGAC
ATTGATGTCTCAGTCATCTGTGCAACATTATGCTATCTCACTGTAATTGA
GTAAAAGTTCAGAAGTGAACTAGTGTGTGGTGAGTGATGGATCTATGATG
CGATTTTTTTTTATAATTTATTTTAGTTATTCGATATTTTTGACATTGAA
AAGTTTGGTGAGAATATGACTAATAAGCGATTTAAGTTATTTATTTTTTA
AGGTACATGTTTATGTATTTATATGCATAAAATATTGTATTCTCCGGTAC
CTAAATTTAAACTATTGTTCAATTGTTGTGC
back to topprotein sequence of PAC:20816293
>PAC:20816293 ID=PAC:20816293; Name=PAC:20816293; organism=Citrus clementina; type=polypeptide; length=217bp
MDKEKLEAMAISQKALDEPVNLLSSSKKEDIYDDIIDVHLKALDDLVNVN
SLFTIAVFVGLSLASRNQRSLDGRPECDPDVGLGKRLILYEVISFACFLL
SSLCSKSLKVLINLEKIKRKIKVKRTPKLEGLFKNILLSGTWRLFLLVLS
IVALFIGIVFLTLSMVYVIQIRVGKLSCGSDYALTSVASLCGIVLLSLLL
YAPSMVFVVIATAPRH*
back to topmRNA from alignment at scaffold_2:25672325..25673455+
Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=1131bp; location=Sequence derived from: scaffold_2:25672325..25673455+ (Citrus clementina
GGATCTGCTTAAATCATCTTGCACAGTAACGCACTTGAAACTCACAGGTA
GCAGTGACAATATCTTCAAAAACACAATAACAAGCTCAAAGATTCTGCCA
TGGATAAGTAAGTATTTGATCTTGATCTCTCTCGTTAAGTTCATCGCCGT
ATACAAGTTATTTCATGGAATCTAACATTTATTTTTTCCATCATTTTGAA
TTTTTTTCTCAGAGAAAAACTTGAGGCTATGGCAATCAGTCAAAAGGCTT
TAGATGAACCAGTGAACTTGCTATCAAGCTCCAAAAAAGAGGACATTTAC
GATGACATAATAGACGTCCATCTAAAAGCTCTAGACGATCTGGTCAACGT
CAACTCCCTCTTCACAATAGCAGTATTTGTGGGATTATCCTTAGCTTCCC
GAAACCAACGGTCTCTGGATGGCCGGCCCGAGTGCGACCCAGACGTTGGC
CTCGGGAAAAGACTCATCTTATACGAAGTTATATCATTCGCCTGCTTCCT
TCTGTCGAGTCTATGCTCCAAGTCACTCAAAGTACTCATCAACTTGGAAA
AAATCAAGAGAAAGATCAAAGTCAAACGGACGCCGAAGCTAGAGGGGCTG
TTTAAGAACATTCTTCTGTCGGGGACCTGGAGGCTATTCTTGCTGGTGCT
ATCGATTGTGGCGTTGTTTATTGGGATTGTTTTCCTGACGCTGTCAATGG
TGTATGTGATTCAGATAAGAGTGGGGAAGCTGTCCTGTGGGAGTGACTAT
GCTTTGACTTCGGTGGCTTCACTGTGTGGTATTGTTCTTCTATCTCTCCT
GCTTTATGCGCCATCCATGGTGTTCGTTGTAATTGCAACTGCCCCAAGAC
ATTGATGTCTCAGTCATCTGTGCAACATTATGCTATCTCACTGTAATTGA
GTAAAAGTTCAGAAGTGAACTAGTGTGTGGTGAGTGATGGATCTATGATG
CGATTTTTTTTTATAATTTATTTTAGTTATTCGATATTTTTGACATTGAA
AAGTTTGGTGAGAATATGACTAATAAGCGATTTAAGTTATTTATTTTTTA
AGGTACATGTTTATGTATTTATATGCATAAAATATTGTATTCTCCGGTAC
CTAAATTTAAACTATTGTTCAATTGTTGTGC
back to topCoding sequence (CDS) from alignment at scaffold_2:25672325..25673455+
>PAC:20816293 ID=PAC:20816293; Name=Ciclev10016664m; organism=Citrus clementina; type=CDS; length=651bp; location=Sequence derived from: scaffold_2:25672325..25673455+ (Citrus clementina
ATGGATAAAGAAAAACTTGAGGCTATGGCAATCAGTCAAAAGGCTTTAGA
TGAACCAGTGAACTTGCTATCAAGCTCCAAAAAAGAGGACATTTACGATG
ACATAATAGACGTCCATCTAAAAGCTCTAGACGATCTGGTCAACGTCAAC
TCCCTCTTCACAATAGCAGTATTTGTGGGATTATCCTTAGCTTCCCGAAA
CCAACGGTCTCTGGATGGCCGGCCCGAGTGCGACCCAGACGTTGGCCTCG
GGAAAAGACTCATCTTATACGAAGTTATATCATTCGCCTGCTTCCTTCTG
TCGAGTCTATGCTCCAAGTCACTCAAAGTACTCATCAACTTGGAAAAAAT
CAAGAGAAAGATCAAAGTCAAACGGACGCCGAAGCTAGAGGGGCTGTTTA
AGAACATTCTTCTGTCGGGGACCTGGAGGCTATTCTTGCTGGTGCTATCG
ATTGTGGCGTTGTTTATTGGGATTGTTTTCCTGACGCTGTCAATGGTGTA
TGTGATTCAGATAAGAGTGGGGAAGCTGTCCTGTGGGAGTGACTATGCTT
TGACTTCGGTGGCTTCACTGTGTGGTATTGTTCTTCTATCTCTCCTGCTT
TATGCGCCATCCATGGTGTTCGTTGTAATTGCAACTGCCCCAAGACATTG
A
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