orange1.1g013275m.v1.1, orange1.1g013275m.v1.1_Csinensis_154_v1.1 (mRNA) Citrus sinensis
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of orange1.1g013275m.v1.1 vs. DB:SwissProt
Match: TPC13_PONAB (Trafficking protein particle complex subunit 13 OS=Pongo abelii OX=9601 GN=TRAPPC13 PE=2 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 7.240e-58 Identity = 138/433 (31.87%), Postives = 217/433 (50.12%), Query Frame = 1 Query: 22 HSLAFRVMRLCRPSLHVEPPLRVD----PTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKVGATHFQEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLK--ADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRXXXXXXXXXXXXSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYD 1302 H LA +VMRL +P+L P+ + P DLF + + DDP + A+ + L +L LPQ FG I+LGETF SYIS++N S V+D+++KA++QT QR L L S + V ++ D ++ H+VKE+G H LVC Y+ GE+ Y +FFKF V PL V+TK + + + FLEA I+N T S ++M++V EPS ++ T L + S SR +P YLY LK + ++G V+GKL I W+TNLGE GRLQT Q+ ++ L++ +P V +++PF + K+TN +++ ++ L +++ I+G ++ L P + L L+++ G+Q I+G+ + D K TY+ Sbjct: 10 HLLALKVMRLTKPTLFTNIPVTCEERDLPGDLF-NQLMRDDPSTV----------------------------NGAEVLMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKADLQTSSQR-LNLSASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQAGEKMYFRKFFKFQVLKPLDVKTKFYNAESDLSSVTDEVFLEAQIQNMTTSPMFMEKVSLEPSIMYNVTELNSVSQAGESVSTFGSRAYLQP-------MDTRQYLYCLKPKKEFAEKAGIIKGVTVIGKLDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSLEAIPDTVNLEEPFHITCKITNCSER---TMDLVLEMCNTNSIHWCGISGRQLGKLHPSSSLC---LALTLLSSVQGLQSISGLRLTDTFLKRTYE 399
BLAST of orange1.1g013275m.v1.1 vs. DB:SwissProt
Match: TPC13_HUMAN (Trafficking protein particle complex subunit 13 OS=Homo sapiens OX=9606 GN=TRAPPC13 PE=1 SV=2) HSP 1 Score: 199.134 bits (505), Expect = 8.752e-58 Identity = 137/433 (31.64%), Postives = 219/433 (50.58%), Query Frame = 1 Query: 22 HSLAFRVMRLCRPSLHVEPPLRVD----PTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKVGATHFQEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQ--SREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRXXXXXXXXXXXXSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYD 1302 H LA +VMRL +P+L P+ + P DLF + + DDP + A+ + L +L LPQ FG I+LGETF SYIS++N S V+D+++KA++QT QR L L S + V ++ D ++ H+VKE+G H LVC Y+ GE+ Y +FFKF V PL V+TK + + + FLEA I+N T S ++M++V EPS ++ T L + + + SR +P YLY LK + + ++G V+GKL I W+TNLGE GRLQT Q+ ++ L++ +P V +++PF + K+TN +++ ++ L +++ I+G ++ L P + L L+++ G+Q I+G+ + D K TY+ Sbjct: 10 HLLALKVMRLTKPTLFTNIPVTCEEKDLPGDLF-NQLMRDDPSTV----------------------------NGAEVLMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKADLQTSSQR-LNLSASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQAGEKMYFRKFFKFQVLKPLDVKTKFYNAESDLSSVTDEVFLEAQIQNMTTSPMFMEKVSLEPSIMYNVTELNSVSQAGECVSTFGSRAYLQP-------MDTRQYLYCLKPKNEFAEKAGIIKGVTVIGKLDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSLEAIPDTVNLEEPFHITCKITNCSER---TMDLVLEMCNTNSIHWCGISGRQLGKLHPSSSLC---LALTLLSSVQGLQSISGLRLTDTFLKRTYE 399
BLAST of orange1.1g013275m.v1.1 vs. DB:SwissProt
Match: TPC13_DANRE (Trafficking protein particle complex subunit 13 OS=Danio rerio OX=7955 GN=trappc13 PE=2 SV=2) HSP 1 Score: 197.593 bits (501), Expect = 2.601e-57 Identity = 141/433 (32.56%), Postives = 221/433 (51.04%), Query Frame = 1 Query: 22 HSLAFRVMRLCRPSLHVEPPLRVD----PTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKVGATHFQEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLK--ADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRXXXXXXXXXXXXSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYD 1302 H LA +VMRL +P+L P+ + P DLF+ L+ D +T K A+++ L +L LPQ FG I+LGETF SYIS++N S+ V+D+++KA++QT QR L L S S V ++ D ++ H+VKE+G H LVC Y+ GE+ Y +FFKF V PL V+TK + FLEA I+N T S ++M++V EPS ++ T L A G S + + + P+ R YLY LK + ++G V+GKL I W+TNLGE GRLQT Q+ ++ L++ +P V +++PF + K+TN +++ ++ L ++ ++G ++ L+P S L L+++ G+Q I+G+ + D K TY+ Sbjct: 10 HLLALKVMRLTKPTLFTNMPVTCEDRDLPGDLFLR---------------LMKDDPSTVKG--------------AETLILGEMLTLPQNFGNIFLGETFSSYISVHNDSSQVVKDILVKADLQTSSQR-LNLSASNSAVSELKPECCIDDVIHHEVKEIGTHILVCAVSYTTQTGEKLYFRKFFKFQVLKPLDVKTKFYNAETDE------VFLEAQIQNITTSPMFMEKVSLEPSMMYNVTELNNVASGDESSESTFGKMSYLQPLDTR------QYLYCLKPKPEFAEKAGVIKGVTVIGKLDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSLEFIPDTVDLEEPFDITCKITNCSERT---MDLLLEMCNTRSVHWCGVSGRQLGKLSPS---ASLSIPLKLLSSVQGLQSISGLRLTDTFLKRTYE 394
BLAST of orange1.1g013275m.v1.1 vs. DB:SwissProt
Match: TPC13_BOVIN (Trafficking protein particle complex subunit 13 OS=Bos taurus OX=9913 GN=TRAPPC13 PE=2 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 3.307e-56 Identity = 135/433 (31.18%), Postives = 216/433 (49.88%), Query Frame = 1 Query: 22 HSLAFRVMRLCRPSLHVEPPLRVD----PTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKVGATHFQEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQ--SREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRXXXXXXXXXXXXSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYD 1302 H LA +VMRL +P+L P+ + P DLF + + DDP + A+ + L +L LPQ FG I+LGETF SYIS++N S V+D+++KA++QT QR L L S + V ++ D ++ H+VKE+G H LVC Y+ GE+ Y +FFKF V PL V+TK + + + FLEA I+N T S ++M++V EPS ++ L + + SR +P YLY LK + ++G V+GKL I W+TNLGE GRLQT Q+ ++ L++ +P V +++PF + K+TN +++ ++ L +++ I+G ++ L P + L L+++ G+Q ++G+ + D K TY+ Sbjct: 10 HLLALKVMRLTKPTLFTNIPVTCEEKDLPGDLF-NQLMRDDPSTV----------------------------NGAEILMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKADLQTSSQR-LNLSASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQSGEKMYFRKFFKFQVLKPLDVKTKFYNAESDLSSVTDEVFLEAQIQNITTSPMFMEKVSLEPSIMYNVAELNSVNQAGECVTTFGSRAYLQP-------MDTRQYLYCLKPKKEFAEKAGIIKGVTVIGKLDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSLEAIPDTVNLEEPFHITCKITNCSER---TMDLVLEMCNTNSIHWCGISGRQLGKLHPSSSLC---LALTLLSSVQGLQSVSGLRLTDTFLKRTYE 399
BLAST of orange1.1g013275m.v1.1 vs. DB:SwissProt
Match: TPC13_MOUSE (Trafficking protein particle complex subunit 13 OS=Mus musculus OX=10090 GN=Trappc13 PE=2 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 4.039e-56 Identity = 136/429 (31.70%), Postives = 220/429 (51.28%), Query Frame = 1 Query: 22 HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKVGATHFQEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQ--SREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRXXXXXXXXXXXXSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYD 1302 H LA +VMRL +P+L P+ + DL D+F+ L+ D +T + A+ + L +L LPQ FG I+LGETF SYIS++N S V+D+++KA++QT QR L L S + V ++ D ++ H+VKE+G H LVC Y+ GE+ Y +FFKF V PL V+TK + + + FLEA I+N T S ++M++V EPS ++ T L + + + SR +P YLY LK + ++G V+GKL I W+TNLGE GRLQT Q+ ++ L++ +P V +++PF + K+TN +++ ++ L +++ I+G ++ L P + L L+++ G+Q ++G+ + D K TY+ Sbjct: 10 HLLALKVMRLTKPTLFTNIPVTCEEKDL--PGDLFNQ---------LMKDDPST--------------VNGAEILMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKADLQTSSQR-LNLSASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQGGEKMYFRKFFKFQVLKPLDVKTKFYNAESDLSSVTDEVFLEAQIQNITTSPMFMEKVSLEPSIMYNVTELNSVTQAGECISTFGSRGYLQP-------MDTRQYLYCLKPKKEFAEKAGIIKGVTVIGKLDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSLEAIPDTVNLEEPFHITCKITNCSERM---MDLVLEMCNTNSIHWCGISGRQLGKLHPSSSLC---LALTLLSSVQGLQSVSGLRLTDTFLKRTYE 399
BLAST of orange1.1g013275m.v1.1 vs. DB:SwissProt
Match: TPC13_RAT (Trafficking protein particle complex subunit 13 OS=Rattus norvegicus OX=10116 GN=Trappc13 PE=2 SV=2) HSP 1 Score: 193.741 bits (491), Expect = 9.796e-56 Identity = 136/429 (31.70%), Postives = 218/429 (50.82%), Query Frame = 1 Query: 22 HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKVGATHFQEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQ--SREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRXXXXXXXXXXXXSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYD 1302 H LA +VMRL +P+L P+ + DL D+F+ L+ D +T + A+ + L +L LPQ FG I+LGETF SYIS++N S V+D+++KA++QT QR L L S + V ++ D ++ H+VKE+G H LVC Y+ GE+ Y +FFKF V PL V+TK + + + FLEA I+N T S ++M++V EPS ++ T L + + + SR +P YLY LK + ++G V+GKL I W+TNLGE GRLQT Q+ ++ L++ +P V +++PF + K+TN + + ++ L ++ I+G ++ L P + L L+++ G+Q ++G+ + D K TY+ Sbjct: 10 HLLALKVMRLTKPTLFTNIPVTCEEKDL--PGDLFNQ---------LMKDDPST--------------VNGAEILMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKADLQTSSQR-LNLSASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQGGEKMYFRKFFKFQVLKPLDVKTKFYNAESDLSSVTDEVFLEAQIQNITTSPMFMEKVSLEPSIMYNVTELNSVNQAGECVSTFGSRGYLQP-------MDTRQYLYCLKPKKEFAEKAGIIKGVTVIGKLDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSLEAIPDTVNLEEPFHITCKITNCSSERT--MDLVLEMCNTTSIHWCGISGRQLGKLHPSSSLC---LALTLLSSVQGLQSVSGLRLTDTFLKRTYE 400
BLAST of orange1.1g013275m.v1.1 vs. DB:SwissProt
Match: TPC13_XENTR (Trafficking protein particle complex subunit 13 OS=Xenopus tropicalis OX=8364 GN=trappc13 PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 7.684e-54 Identity = 137/430 (31.86%), Postives = 219/430 (50.93%), Query Frame = 1 Query: 22 HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKVGATHFQEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSD-YNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRXXXXXXXXXXXXSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLN--LIATKLGVQRITGITVFDKLEKITYD 1302 H LA +VMRL +P+L P+ + DL D+F L+ D +T K A+++ L +L LPQ FG I+LGETF SYIS++N S V+D+ +KA++QT QR L L S + V ++ D ++ H+VKE+G H LVC Y+ GE+ Y +FFKF V PL V+TK + FLEA I+N T S ++M++V EPS ++ + L + D + + + P+ R YLY LK + ++G V+GKL I W+TNLGE GRLQT Q+ ++ L++ +P V +++PF + K+TN + + ++ L +++ ++G ++ L P S+ HL L+++ G+Q ++G+ + D K TY+ Sbjct: 10 HLLALKVMRLTKPTLFTNIPVTCEERDL--PGDLFS---------TLMKDDPSTVKG--------------AETLMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDIQVKADLQTSSQR-LNLSASTAVVSELKPDSCIDDVIHHEVKEIGTHILVCAVSYTTQTGEKMYFRKFFKFQVLKPLDVKTKFYNAETDE------VFLEAQIQNITTSPMFMEKVSLEPSIMYNVSELNTVITNGDGCSTFGTKTYLQPLDTR------QYLYCLKPKPEFAEKAGVIKGVTVIGKLDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSIETIPDTVRLEEPFDITCKITNCSSER--TMDLVLEMCNTNAIHWCGVSGRQLGKLHP-----SSSLHLTLALLSSVQGLQSVSGLRLTDTFLKRTYE 394
BLAST of orange1.1g013275m.v1.1 vs. DB:SwissProt
Match: TPC13_CAEBR (Probable trafficking protein particle complex subunit 13 homolog OS=Caenorhabditis briggsae OX=6238 GN=CBG04321 PE=3 SV=2) HSP 1 Score: 184.111 bits (466), Expect = 2.301e-52 Identity = 138/450 (30.67%), Postives = 225/450 (50.00%), Query Frame = 1 Query: 1 MSSTPGTHSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILL-LDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKVGATHFQEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGS------NVLGKLQITWRTNLGEPGRXXXXXXXXXXXXSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYDSLPDLEIFV 1329 +S++ LA RVMRL RP + P D F DP+ + L++ V ++++ SR HD + + L+ PQ F IYLGETF Y+++ N S V +V +K E+QT QR++L +ES + G+ ++ H+VKE+G H L+C+ Y GE Y +FFKF VS P+ V+TK + A Q++ +LEA IEN + SN+++++VE +PSQ++ T + H D + ++ KP I +L+ L SPV V + +GKL ++WRT++GE GRLQT + ++ L+V + P+ V + KPF + +L N +++ ++ L Q + + + +G+ + L P DF LN+ +G+Q I+GI + D K Y+ +IFV Sbjct: 5 ISNSSTQQLLALRVMRLARP--------KFAPLDGFS-----HDPVDPTGFGELLAGKV-----AEISKESR---HD----LPIGEYLIAPQMFENIYLGETFTFYVNVVNESESNVVNVSLKCELQTSTQRVVLPCSVQDVTIESTKCDGQ---VISHEVKEIGQHILICSVNYKTLSGENMYFRKFFKFPVSKPIDVKTKFYSAEDNAN--QDV-YLEAQIENTSNSNMFLERVELDPSQHYKVTSIS----HEDEFPEVGKLLKP-------KDIRQFLFCL--------SPVDVNNTLGYKDLTSIGKLDMSWRTSMGEKGRLQTSALQRIAPGYGDVRLSVEKTPACVDVQKPFEVACRLYNCSERALD-LQLRLEQPSNRQLVICSPSGVSLGQLPPSRY---VDFALNVFPVAVGIQSISGIRITDTFTKRHYEHDDIAQIFV 400
BLAST of orange1.1g013275m.v1.1 vs. DB:SwissProt
Match: TPC13_CAEEL (Probable trafficking protein particle complex subunit 13 homolog OS=Caenorhabditis elegans OX=6239 GN=C56C10.7 PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 6.097e-52 Identity = 135/453 (29.80%), Postives = 221/453 (48.79%), Query Frame = 1 Query: 1 MSSTPGTHS----LAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILL-LDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKVGATHFQEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIFKPP-----VLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRXXXXXXXXXXXXSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYDSLPDLEIFV 1329 M+ P + S LA RVMRL RP + P D F DP+ + L++ V S+++ SR + + L+ PQ F IYLGETF Y+++ N S V V +K E+QT QR++L + +ES + G+ ++ H+VKE+G H L+C+ Y GE Y +FFKF VS P+ V+TK + A Q++ +LEA IEN + +N+++++VE +PSQ+++ T + H D ++ KP + + +HN L + S +GKL ++WRT++GE GRLQT + ++ L+V + P+ V + KPF + +L N +++ ++ L Q + +G+ + L P + DF LN+ +G+Q I+GI + D K Y+ +IFV Sbjct: 1 MADNPASSSSQQLLALRVMRLARP--------KFAPVDGFS-----HDPVDPTGFGELLAGKV-----SEISKESR-------QDLPIGEYLIAPQMFENIYLGETFTFYVNVVNESEKTVSSVSLKCELQTSTQRVVLPCSVQDATIESSKCEGQ---VISHEVKEIGQHILICSVNYKTSNGENMYFRKFFKFPVSKPIDVKTKFYSAEDNAN--QDV-YLEAQIENTSNANMFLEKVELDPSQHYNVTSIA----HEDEFGDVGKLLKPKDIRQFLFCLTPADVHNTLGYKDLTS--------------IGKLDMSWRTSMGEKGRLQTSALQRIAPGYGDVRLSVEKTPACVDVQKPFEVSCRLYNCSERALD-LQLRLEQPSNRHLVFCSPSGVSLGQLPPSQ---HVDFSLNVFPVTVGIQSISGIRITDTFTKRIYEHDDIAQIFV 400
BLAST of orange1.1g013275m.v1.1 vs. DB:SwissProt
Match: TPC13_XENLA (Trafficking protein particle complex subunit 13 OS=Xenopus laevis OX=8355 GN=trappc13 PE=2 SV=2) HSP 1 Score: 182.956 bits (463), Expect = 9.861e-52 Identity = 136/430 (31.63%), Postives = 217/430 (50.47%), Query Frame = 1 Query: 22 HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVKVGATHFQEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQS---REIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRXXXXXXXXXXXXSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYD 1302 H LA +VMRL +P+L P+ + DL D+F L+ D +T K +++ + L +L LPQ FG I+LGETF SYIS++N S V+DV +KA++QT QR L L S + V ++ D ++ H+VKE+G H LVC Y+ GE+ Y +FFKF V PL V+TK + FLEA I+N T S ++M++V EPS ++ + L + D+ S + + P+ R YLY LK + ++G V+GKL I W+TNLGE GRLQT Q+ ++ L++ +P V +++PF + K+TN + + ++ L +++ ++G ++ L P + T L+ + G+Q ++G+ + D K TY+ Sbjct: 10 HLLALKVMRLTKPTLFTNIPVTCEEKDL--PGDLFS---------TLMKDDPSTVKGAEI--------------LMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDVQVKADLQTSSQR-LNLSASSAVVADLKPDSCIDDVIHHEVKEIGTHILVCAVSYTIQSGEKMYFRKFFKFQVLKPLDVKTKFYNAETDE------VFLEAQIQNITTSPMFMEKVSLEPSIMYNVSELNTVITNGDWKGSSTFGTKTYLQPLDTR------QYLYCLKPKPEFAEKAGVIKGVTVIGKLDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSIETIPDTVRLEEPFDITCKITNCSSER--TMDLVLEMCNTNAIHWSGVSGRQLGKLHPSSSLHLTLTLLSSVQ---GLQSVSGLRLTDTFLKRTYE 396 The following BLAST results are available for this feature:
BLAST of orange1.1g013275m.v1.1 vs. DB:SwissProt
Analysis Date: 2018-06-08 (C. sinensis v1.1 CDS) Total hits: 10 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >orange1.1g013275m.v1.1_Csinensis_154_v1.1 ID=orange1.1g013275m.v1.1_Csinensis_154_v1.1; Name=orange1.1g013275m.v1.1; organism=Citrus sinensis; type=mRNA; length=4427bpback to top mRNA from alignment at scaffold00010:2025933..2030359+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=4427bp; location=Sequence derived from: scaffold00010:2025933..2030359+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at scaffold00010:2025933..2030359+ >orange1.1g013275m.v1.1_Csinensis_154_v1.1 ID=orange1.1g013275m.v1.1_Csinensis_154_v1.1; Name=orange1.1g013275m.v1.1; organism=Citrus sinensis; type=CDS; length=1341bp; location=Sequence derived from: scaffold00010:2025933..2030359+ (Citrus sinensisback to top |