orange1.1t00930.3, orange1.1t00930.3_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of orange1.1t00930.3 vs. DB:SwissProt
Match: CDC25_ARATH (Dual specificity phosphatase Cdc25 OS=Arabidopsis thaliana OX=3702 GN=CDC25 PE=1 SV=1) HSP 1 Score: 215.698 bits (548), Expect = 2.601e-72 Identity = 99/126 (78.57%), Postives = 110/126 (87.30%), Query Frame = 1 Query: 1 MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKISDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCK 378
MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKIS L+Q V+ KDTLVFHCALSQVRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC +VPCK
Sbjct: 17 MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNVKDKDTLVFHCALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRCAEVPCK 142
BLAST of orange1.1t00930.3 vs. DB:SwissProt
Match: ACR22_ORYSJ (Arsenate reductase 2.2 OS=Oryza sativa subsp. japonica OX=39947 GN=ACR2.2 PE=1 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 2.643e-56 Identity = 76/126 (60.32%), Postives = 97/126 (76.98%), Query Frame = 1 Query: 1 MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKISDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCK 378
MAR +SY+S +QL+ + R P IAV+DVRD+ER YD HI GS HY SDSF +++ +L Q +GK+TLVFHCALS+VRGP+CA+ +YL E ED+ + +I VLERGF GWE SG+PVCRC D PCK
Sbjct: 1 MARGVSYVSAAQLVPMLRDPRIAVVDVRDEERIYDAHIAGSHHYASDSFGERLPELAQATKGKETLVFHCALSKVRGPSCAQMYLDYLSEADEDSDVKNIMVLERGFNGWELSGRPVCRCKDAPCK 126
BLAST of orange1.1t00930.3 vs. DB:SwissProt
Match: ACR21_ORYSJ (Arsenate reductase 2.1 OS=Oryza sativa subsp. japonica OX=39947 GN=ACR2.1 PE=1 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 5.958e-54 Identity = 75/127 (59.06%), Postives = 98/127 (77.17%), Query Frame = 1 Query: 1 MARSISYISGSQLLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKISDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCK 378
MARS+SY+S ++LL++ R P +A+IDVRD+ERSY HI GS H+ S SF ++ +L + KDT+VFHCALS+VRGP+CAK ++YL E KE++G +I VLERGF GWE SG+PVCRCTD PCK
Sbjct: 24 MARSVSYVSAAKLLAMARSNPRVAIIDVRDEERSYQAHIGGSHHFSSRSFAARLPELARATGDKDTVVFHCALSKVRGPSCAKMFSDYLSETKEESGTKNIMVLERGFNGWELSGQPVCRCTDAPCK 150
BLAST of orange1.1t00930.3 vs. DB:SwissProt
Match: IBP1_SCHPO (Dual specificity phosphatase ibp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ibp1 PE=1 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 1.375e-12 Identity = 42/125 (33.60%), Postives = 67/125 (53.60%), Query Frame = 1 Query: 10 SISYISGSQLLS-LKRRPN-IAVIDVRDDERSYDGH-ITGSLHYPSDSFTDKISDLIQEVRGKDTLVFHCALSQVRGPTCAKRLA----NYLDEVKEDTGIN----------SIFVLERGFKGWE 333
++SY+S L L PN I++IDVRD + Y+G I GS+ PSD+F + + ++ K +L+ HC SQVRGP A+ L+ N + E KE ++ ++++L GF W+
Sbjct: 3 TLSYVSPDALKGWLMESPNEISIIDVRDYD--YEGERIPGSVRIPSDTFLASVDQHVDDLMKKRSLIVHCTYSQVRGPKAARVLSEILRNRITESKEKLSLSQKEKLFQNLPTVYILHGGFSAWK 125
BLAST of orange1.1t00930.3 vs. DB:SwissProt
Match: ARR2_YEAST (Arsenical-resistance protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ARR2 PE=4 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 7.302e-8 Identity = 43/123 (34.96%), Postives = 63/123 (51.22%), Query Frame = 1 Query: 13 ISYISGSQLLSL--KRRPNIAVIDVRDDERSYDGHITGSLHYP-SDSFTDKISDLIQEVRG-KDT--------LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIF---VLERGFKGWEA 336
+S+I+ QL L +R + V+D+R ++ + D HIT + H P + T+K L Q ++G DT ++FHC S+ RGP A + YL E ED I S F +L GF WE
Sbjct: 2 VSFITSRQLKGLIENQRKDFQVVDLRREDFARD-HITNAWHVPVTAQITEK--QLNQLIKGLSDTFSSSQFVKVIFHCTGSKNRGPKVAAKFETYLQE--ED--ITSKFESCILVGGFYAWET 117 The following BLAST results are available for this feature:
BLAST of orange1.1t00930.3 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >orange1.1t00930.3_Hzau_Valencia_v1.0 ID=orange1.1t00930.3_Hzau_Valencia_v1.0; Name=orange1.1t00930.3; organism=Citrus sinensis; type=mRNA; length=968bpback to top protein sequence of orange1.1t00930.3 >orange1.1t00930.3_Hzau_Valencia_v2.0-protein ID=orange1.1t00930.3_Hzau_Valencia_v2.0-protein; Name=orange1.1t00930.3; organism=Citrus sinensis; type=polypeptide; length=133bpback to top protein sequence of orange1.1t00930.3_Hzau_Valencia_v1.0 >orange1.1t00930.3_Hzau_Valencia_v1.0 ID=orange1.1t00930.3_Hzau_Valencia_v1.0; Name=orange1.1t00930.3_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=133bpback to top mRNA from alignment at chrUn:13908494..13911453+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2960bp; location=Sequence derived from: chrUn:13908494..13911453+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at chrUn:13908494..13911453+ >orange1.1t00930.3_Hzau_Valencia_v1.0 ID=orange1.1t00930.3_Hzau_Valencia_v1.0; Name=orange1.1t00930.3; organism=Citrus sinensis; type=CDS; length=399bp; location=Sequence derived from: chrUn:13908494..13911453+ (Citrus sinensisback to top |