Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
orange1.1t00930.3 orange1.1t00930.3_Hzau_Valencia_v2.0-protein Citrus sinensis polypeptide orange1.1t00930.3_Hzau_Valencia_v1.0 orange1.1t00930.3_Hzau_Valencia_v1.0 Citrus sinensis polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
orange1.1t00930.3.utr5.1 orange1.1t00930.3.utr5.1_Hzau_Valencia_v1.0 Citrus sinensis five_prime_UTR
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
orange1.1t00930.3.exon.1 orange1.1t00930.3.exon.1_Hzau_Valencia_v1.0 Citrus sinensis exon orange1.1t00930.3.exon.2 orange1.1t00930.3.exon.2_Hzau_Valencia_v1.0 Citrus sinensis exon orange1.1t00930.3.exon.3 orange1.1t00930.3.exon.3_Hzau_Valencia_v1.0 Citrus sinensis exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
orange1.1t00930.3.cds.1 orange1.1t00930.3.cds.1_Hzau_Valencia_v1.0 Citrus sinensis CDS orange1.1t00930.3.cds.2 orange1.1t00930.3.cds.2_Hzau_Valencia_v1.0 Citrus sinensis CDS orange1.1t00930.3.cds.3 orange1.1t00930.3.cds.3_Hzau_Valencia_v1.0 Citrus sinensis CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
orange1.1t00930.3.utr3.1 orange1.1t00930.3.utr3.1_Hzau_Valencia_v1.0 Citrus sinensis three_prime_UTR
Homology
BLAST of orange1.1t00930.3 vs. DB:SwissProt
Match:
CDC25_ARATH (Dual specificity phosphatase Cdc25 OS=Arabidopsis thaliana OX=3702 GN=CDC25 PE=1 SV=1)
HSP 1 Score: 215.698 bits (548), Expect = 2.601e-72
Identity = 99/126 (78.57%), Postives = 110/126 (87.30%), Query Frame = 1
Query: 1 MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKISDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCK 378
MARSISYI+ +QLL L RRPNIA+IDVRD+ER+YDGHI GSLHY S SF DKIS L+Q V+ KDTLVFHCALSQVRGPTCA+RL NYLDE KEDTGI +I +LERGF GWEASGKPVCRC +VPCK
Sbjct: 17 MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNVKDKDTLVFHCALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRCAEVPCK 142
BLAST of orange1.1t00930.3 vs. DB:SwissProt
Match:
ACR22_ORYSJ (Arsenate reductase 2.2 OS=Oryza sativa subsp. japonica OX=39947 GN=ACR2.2 PE=1 SV=1)
HSP 1 Score: 174.866 bits (442), Expect = 2.643e-56
Identity = 76/126 (60.32%), Postives = 97/126 (76.98%), Query Frame = 1
Query: 1 MARSISYISGSQLLSLKRRPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKISDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCK 378
MAR +SY+S +QL+ + R P IAV+DVRD+ER YD HI GS HY SDSF +++ +L Q +GK+TLVFHCALS+VRGP+CA+ +YL E ED+ + +I VLERGF GWE SG+PVCRC D PCK
Sbjct: 1 MARGVSYVSAAQLVPMLRDPRIAVVDVRDEERIYDAHIAGSHHYASDSFGERLPELAQATKGKETLVFHCALSKVRGPSCAQMYLDYLSEADEDSDVKNIMVLERGFNGWELSGRPVCRCKDAPCK 126
BLAST of orange1.1t00930.3 vs. DB:SwissProt
Match:
ACR21_ORYSJ (Arsenate reductase 2.1 OS=Oryza sativa subsp. japonica OX=39947 GN=ACR2.1 PE=1 SV=1)
HSP 1 Score: 169.859 bits (429), Expect = 5.958e-54
Identity = 75/127 (59.06%), Postives = 98/127 (77.17%), Query Frame = 1
Query: 1 MARSISYISGSQLLSLKR-RPNIAVIDVRDDERSYDGHITGSLHYPSDSFTDKISDLIQEVRGKDTLVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIFVLERGFKGWEASGKPVCRCTDVPCK 378
MARS+SY+S ++LL++ R P +A+IDVRD+ERSY HI GS H+ S SF ++ +L + KDT+VFHCALS+VRGP+CAK ++YL E KE++G +I VLERGF GWE SG+PVCRCTD PCK
Sbjct: 24 MARSVSYVSAAKLLAMARSNPRVAIIDVRDEERSYQAHIGGSHHFSSRSFAARLPELARATGDKDTVVFHCALSKVRGPSCAKMFSDYLSETKEESGTKNIMVLERGFNGWELSGQPVCRCTDAPCK 150
BLAST of orange1.1t00930.3 vs. DB:SwissProt
Match:
IBP1_SCHPO (Dual specificity phosphatase ibp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ibp1 PE=1 SV=1)
HSP 1 Score: 63.5438 bits (153), Expect = 1.375e-12
Identity = 42/125 (33.60%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 10 SISYISGSQLLS-LKRRPN-IAVIDVRDDERSYDGH-ITGSLHYPSDSFTDKISDLIQEVRGKDTLVFHCALSQVRGPTCAKRLA----NYLDEVKEDTGIN----------SIFVLERGFKGWE 333
++SY+S L L PN I++IDVRD + Y+G I GS+ PSD+F + + ++ K +L+ HC SQVRGP A+ L+ N + E KE ++ ++++L GF W+
Sbjct: 3 TLSYVSPDALKGWLMESPNEISIIDVRDYD--YEGERIPGSVRIPSDTFLASVDQHVDDLMKKRSLIVHCTYSQVRGPKAARVLSEILRNRITESKEKLSLSQKEKLFQNLPTVYILHGGFSAWK 125
BLAST of orange1.1t00930.3 vs. DB:SwissProt
Match:
ARR2_YEAST (Arsenical-resistance protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ARR2 PE=4 SV=1)
HSP 1 Score: 51.2174 bits (121), Expect = 7.302e-8
Identity = 43/123 (34.96%), Postives = 63/123 (51.22%), Query Frame = 1
Query: 13 ISYISGSQLLSL--KRRPNIAVIDVRDDERSYDGHITGSLHYP-SDSFTDKISDLIQEVRG-KDT--------LVFHCALSQVRGPTCAKRLANYLDEVKEDTGINSIF---VLERGFKGWEA 336
+S+I+ QL L +R + V+D+R ++ + D HIT + H P + T+K L Q ++G DT ++FHC S+ RGP A + YL E ED I S F +L GF WE
Sbjct: 2 VSFITSRQLKGLIENQRKDFQVVDLRREDFARD-HITNAWHVPVTAQITEK--QLNQLIKGLSDTFSSSQFVKVIFHCTGSKNRGPKVAAKFETYLQE--ED--ITSKFESCILVGGFYAWET 117
The following BLAST results are available for this feature:
BLAST of orange1.1t00930.3 vs. DB:SwissProt
Analysis Date: 2018-06-07 (
C. sinensis v2.0, HZAU CDS )
Total hits: 5
100 200 300 400 500 600 700 800 900 Expect = 2.60e-72 / Id = 78.57 Expect = 2.64e-56 / Id = 60.32 Expect = 5.96e-54 / Id = 59.06 Expect = 1.38e-12 / Id = 33.60 Expect = 7.30e-8 / Id = 34.96 Sequence CDC25_ARATH ACR22_ORYSJ ACR21_ORYSJ IBP1_SCHPO ARR2_YEAST
Match Name E-value Identity Description
CDC25_ARATH 2.601e-72 78.57 Dual specificity phosphatase Cdc25 OS=Arabidopsis ... [more] ACR22_ORYSJ 2.643e-56 60.32 Arsenate reductase 2.2 OS=Oryza sativa subsp. japo... [more] ACR21_ORYSJ 5.958e-54 59.06 Arsenate reductase 2.1 OS=Oryza sativa subsp. japo... [more] IBP1_SCHPO 1.375e-12 33.60 Dual specificity phosphatase ibp1 OS=Schizosacchar... [more] ARR2_YEAST 7.302e-8 34.96 Arsenical-resistance protein 2 OS=Saccharomyces ce... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>orange1.1t00930.3_Hzau_Valencia_v1.0 ID=orange1.1t00930.3_Hzau_Valencia_v1.0; Name=orange1.1t00930.3; organism=Citrus sinensis; type=mRNA; length=968bp back to top protein sequence of orange1.1t00930.3
>orange1.1t00930.3_Hzau_Valencia_v2.0-protein ID=orange1.1t00930.3_Hzau_Valencia_v2.0-protein; Name=orange1.1t00930.3; organism=Citrus sinensis; type=polypeptide; length=133bp back to top protein sequence of orange1.1t00930.3_Hzau_Valencia_v1.0
>orange1.1t00930.3_Hzau_Valencia_v1.0 ID=orange1.1t00930.3_Hzau_Valencia_v1.0; Name=orange1.1t00930.3_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=133bp back to top mRNA from alignment at chrUn:13908494..13911453+
Legend: five_prime_UTR exon polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=2960bp; location=Sequence derived from: chrUn:13908494..13911453+ (Citrus sinensisTTTTTATTTATCTATTATTTATTTGTTTTATAAAACGCATCGTAGGCTTG
TACTCGGTAAACAGCAGATAGAGAGAGAGAGATCGAAAAGTGAAGAAGAG
AAAGCA ATGGCTCGGTCCATCTCCTACATATCGGGCTCGCAGCTTCTCTC
TCTGAAACGCCGTCCAAATATTGCCGTTATAGATGTCAG GGA
CGATGAAAGGAGTTACGATGGGCATATAACAGGATCTCTGCACTACCCCA
GTGACAGCTTCACTGATAAGATCTCTGATCTTATTCAAGAGGTCAGGGGC
AAAGATACCCTTGTTTTTCACTGCGCTTTAAGCCAG GTTCGTGGCCCAACTTGCGCCAAGAGGCTT
GCTAATTATCTCGACGAGGTGAAAGAAGATACCGGGATAAATAGCATTTT
TGTCCTGGAACGTGGCTTCAAGGGCTGGGAAGCTTCTGGGAAACCTGTTT
GTCGCTGCACTGATGTTCCATGTAAGGAGGAGAATCAACAATATTGA TTT
GATGCAAATCACAGTTGAGAATCACATATAATTATGTCCCAATAGTGTTA
TAGCACTGTTTGTTTAGTGAATTCATTCCTGACATTACATGATGCTACTT
AAACAATATAATATGTAATGCTAGTTTTTGATTTAGTTTCTACCAACTGT
GCTTCCTTGGGTAAACATTGCGGATATGAGAGCCTCTCATCACTTCCATT
CTCTAACTGTTTCTTCGTCATTGCATTTGATGTAGTTTTCTCCGGAATTC
ATTGGAGCAGTATTTCTCCTTCTTCATAGAAGATATTCAAGCTGAGATCG
TTGCCACTGCATAGATCAAGACTAGTCTGGACAAATTTTTACCGTATTGT
GACAAAACCATGATATTGTTGAAAAATACTTTGCCGTCATGATTGAAGCT
GATTGTGACCATTTTGGTCAAGGATAGATGGTTGTTTAGGTTATTATCTA
CCTCTTTATC back to top Coding sequence (CDS) from alignment at chrUn:13908494..13911453+
>orange1.1t00930.3_Hzau_Valencia_v1.0 ID=orange1.1t00930.3_Hzau_Valencia_v1.0; Name=orange1.1t00930.3; organism=Citrus sinensis; type=CDS; length=399bp; location=Sequence derived from: chrUn:13908494..13911453+ (Citrus sinensis back to top
