Fortunella hindsii S3y-45 genome v2.0
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Overview
About the assembly For this genome, please cite Wang et al, Structural variation and parallel evolution of apomixis in citrus during domestication and diversification. This data was downloaded from the Citrus Pan-Genome to Breeding Database website. The manuscript identifies accession S3y-45 as the sample that was sequenced and this is an improved version of the previous assembly. Assembly metrics
Assembly
The Fortunella hindsii S3y-45 v2.0 genome v1.0 assembly file is available in FASTA format. Downloads
Gene Predictions
The Fortunella hindsii S3y-45 v2.0 genome gene prediction files are available in FASTA and GFF3 formats. Downloads
Functional Analysis
Functional annotation for the Fortunella hindsii S3y-45 genome v2.0 are available for download below. The Fortunella hindsii S3y-45 genome v2.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS). Downloads
Homology
Homology of the Fortunella hindsii S3y-45 genome v2.0 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-9 was used for the NCBI nr (Release 2021-09) and 1e-6 for the Arabidoposis proteins (Araport11), UniProtKB/SwissProt (Release 2021-09), and UniProtKB/TrEMBL (Release 2021-09) databases. The best hit reports are available for download in Excel format. Protein Homologs
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