orange1.1g022138m, PAC:18136401 (mRNA) Citrus sinensis
|
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of orange1.1g022138m vs. Prunus Persica v1.0
Match: ppa008427m () HSP 1 Score: 429.483 bits (1103), Expect = 1.028e-120 Identity = 203/270 (75.19%), Postives = 233/270 (86.30%), Query Frame = 1 Query: 94 SHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASAD 903
++ PT+ AD LNK +NIFETLSS +T EA T +E+ DA+NQ ++QFLKWPMWLLGP +LL TGMVPTLWLP+SSIFLGPNIASLLSL+GLDCIFN+GATLFLLMADSCAR K +AC SKPPFSY+FWNMVA TGFIIPL+M FGSQKGFLQPQLP I F+VL+GPYLLL+S+QILTEMLTWHWQSPVWLVTPVVYE+YR+LQLMRGLKLG ELSAPAW++HT+RGLV WW+LIL +QLMRVAW+AGFTS+ R QQ S D
Sbjct: 62 TYTPTESADDSFLNKTTNIFETLSSVSTDEAQETNSEKRIDASNQTRPEVQFLKWPMWLLGPSLLLITGMVPTLWLPLSSIFLGPNIASLLSLVGLDCIFNLGATLFLLMADSCARPKLPAQACKSKPPFSYQFWNMVATVTGFIIPLMMAFGSQKGFLQPQLPLISFSVLMGPYLLLISVQILTEMLTWHWQSPVWLVTPVVYEAYRLLQLMRGLKLGTELSAPAWMMHTIRGLVSWWVLILSMQLMRVAWYAGFTSRTRHQQQRPSDD 331
BLAST of orange1.1g022138m vs. Prunus Persica v1.0
Match: ppa007436m () HSP 1 Score: 72.0182 bits (175), Expect = 4.164e-13 Identity = 60/206 (29.13%), Postives = 92/206 (44.66%), Query Frame = 1 Query: 196 KTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSK----PPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRG 795
K EE NN Q L W +GP +LL + + P+L+L +S++F + L L + IF G +FLL+ D R +S P + ++ A IIP++ + G++ P A L PYL+ + +Q E + +SP W V PV+++ YR+ QL R +L LS TVRG
Sbjct: 131 KREEEVSTNNPERNQNNLL----WFIGPAVLLASFIFPSLYLRKILSTVFEDSLLTDFLILFFTEAIFYSGVAVFLLLIDHLRRPTEPELIVHSNRTLTPQLGQRISSVAALVLSLIIPMVTM-----GYVWPWTGPAASATL-APYLVGIVVQFAFEQCARYKKSPSWPVIPVIFQVYRLHQLNRAAQLVTALS------FTVRG 320
BLAST of orange1.1g022138m vs. Vitis vinifera
Match: GSVIVT01027684001 (assembled CDS) HSP 1 Score: 445.662 bits (1145), Expect = 1.179e-125 Identity = 224/332 (67.47%), Postives = 256/332 (77.11%), Query Frame = 1 Query: 1 MASLAQAPSAMSTVGVLWTLPRSMRL--------------VNFK----------------TSHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASADG 906
MASLAQAPS M++V V R M+L + K +++PTD+ L SNIFETL+SD+TAEAP T TEE+ +NQ QLQFLKWPMWLLGP +LL TGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFN+GATLFLLMAD+CAR KN + NSK PFSY+FWN+VA TGF++PL++ FGSQ GF QPQLPFIPFAVL+GPYLLLLS+QILTEMLTWHWQSPVWLVTPVVYE+YRVLQLMRGLKLGAELSAPAW++HTVRGLVCWW+LILG+Q+MRVAWFAGFT+ A Q+S ADG
Sbjct: 93 MASLAQAPSTMASVTVPNVHHRGMKLFQPSISLHGFTFPHIRIKHPPVCCTKLTPWEPSPVTYSPTDEKGSDFLRGTSNIFETLNSDDTAEAPVTNTEELIHTSNQSSGQLQFLKWPMWLLGPSLLLATGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNLGATLFLLMADACARPKNLAQPLNSKAPFSYQFWNVVATITGFVVPLIVFFGSQNGFFQPQLPFIPFAVLMGPYLLLLSVQILTEMLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLGAELSAPAWMMHTVRGLVCWWVLILGMQVMRVAWFAGFTAGAWPQKSSTLADG 424
BLAST of orange1.1g022138m vs. Vitis vinifera
Match: GSVIVT01007705001 (assembled CDS) HSP 1 Score: 70.4774 bits (171), Expect = 1.031e-12 Identity = 55/184 (29.89%), Postives = 86/184 (46.74%), Query Frame = 1 Query: 262 MWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSK----PPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRG 795
+W +GP IL+ + + P+L+L +S++F + L L + +F G +FLL+ D RS NS P ++ + A IIP++ + G + P A L PYL+ + +Q E + +SP W V PVV++ YR+ QL R +L LS TVRG
Sbjct: 137 LWFIGPSILVASFIFPSLYLRRILSTVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDRLRRSLEPVSDTNSHRIPAPQLGHRIASGAALVLSLIIPMVTM-----GLVWPWTGPAASATL-APYLVGIVVQFAFEQYARYIKSPSWPVIPVVFQVYRLHQLNRAAQLVTALS------FTVRG 308
BLAST of orange1.1g022138m vs. Vitis vinifera
Match: GSVIVT01009618001 (assembled CDS) HSP 1 Score: 50.8322 bits (120), Expect = 8.455e-7 Identity = 50/214 (23.36%), Postives = 87/214 (40.65%), Query Frame = 1 Query: 262 MWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVL-------LGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRG-----LKLGAELSAPAW--------------IVHTVRGLVCWWILI 819
+W+L P L+ + ++P +L I +I +A +++ I + +F IG FL + D R FS K W ++ G++ G K F ++ + VL + P+L+ + Q+ EM S W + P+++E YR+ QL + + + A AP + V GLVC W L+
Sbjct: 136 LWVLAPVALISSLVLPQFFLDSAIEAILKDEVLAEIVATIFSEAMFYIGLATFLHVTDHVQRPYLQ---------FSPKRWGLITGLKGYLTTAFFTMGF-KIFAPFFAVYVTWPVLGPSALVAVAPFLVGCAAQLAFEMRLSKRGSSCWPLVPIIFEVYRLYQLSKAAHFMDILILAMKEAPVTPDIVERSGALVAMVVTFQVLGLVCLWSLM 339
BLAST of orange1.1g022138m vs. TAIR10
Match: AT3G60590.2 (| chr3:22398764-22399753 FORWARD LENGTH=330) HSP 1 Score: 358.607 bits (919), Expect = 2.761e-99 Identity = 167/270 (61.85%), Postives = 212/270 (78.52%), Query Frame = 1 Query: 97 HAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGF---LQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPAS 897
HA ++A +L+K +N+FE++ S++ E + A + Q+Q LKWP+WLLGP +LL +GM PTLWLP+SS+FLG N+ SLLSLIGLDCIFN+GATLFLLMADSCAR K+ +++CNSKPPFSYKFWNM + GF++P+L+LFGSQ G LQPQ+PF+ AV+L PY +LL++Q LTE+LTWHWQSPVWLVTPVVYE+YR+LQLMRGL L AE++AP W+VH +RGLV WW+LILG+QLMRVAWFAGF S+ Q P S
Sbjct: 61 HASAEEAADIVLDKTANVFESIVSESAEEEKVDMS-----AQQRTNSQVQVLKWPIWLLGPSVLLTSGMAPTLWLPLSSVFLGSNVVSLLSLIGLDCIFNLGATLFLLMADSCARPKDPSQSCNSKPPFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLASLQPQIPFLSSAVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWVVHMLRGLVSWWVLILGMQLMRVAWFAGFASRTTTGQQPQS 325
BLAST of orange1.1g022138m vs. TAIR10
Match: AT3G60590.3 (| chr3:22398228-22399753 FORWARD LENGTH=405) HSP 1 Score: 358.607 bits (919), Expect = 2.761e-99 Identity = 167/270 (61.85%), Postives = 212/270 (78.52%), Query Frame = 1 Query: 97 HAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGF---LQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPAS 897
HA ++A +L+K +N+FE++ S++ E + A + Q+Q LKWP+WLLGP +LL +GM PTLWLP+SS+FLG N+ SLLSLIGLDCIFN+GATLFLLMADSCAR K+ +++CNSKPPFSYKFWNM + GF++P+L+LFGSQ G LQPQ+PF+ AV+L PY +LL++Q LTE+LTWHWQSPVWLVTPVVYE+YR+LQLMRGL L AE++AP W+VH +RGLV WW+LILG+QLMRVAWFAGF S+ Q P S
Sbjct: 136 HASAEEAADIVLDKTANVFESIVSESAEEEKVDMS-----AQQRTNSQVQVLKWPIWLLGPSVLLTSGMAPTLWLPLSSVFLGSNVVSLLSLIGLDCIFNLGATLFLLMADSCARPKDPSQSCNSKPPFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLASLQPQIPFLSSAVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWVVHMLRGLVSWWVLILGMQLMRVAWFAGFASRTTTGQQPQS 400
BLAST of orange1.1g022138m vs. TAIR10
Match: AT3G60590.4 (| chr3:22399043-22399753 FORWARD LENGTH=237) HSP 1 Score: 344.354 bits (882), Expect = 5.388e-95 Identity = 156/223 (69.96%), Postives = 189/223 (84.75%), Query Frame = 1 Query: 238 QLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGF---LQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPAS 897
Q+Q LKWP+WLLGP +LL +GM PTLWLP+SS+FLG N+ SLLSLIGLDCIFN+GATLFLLMADSCAR K+ +++CNSKPPFSYKFWNM + GF++P+L+LFGSQ G LQPQ+PF+ AV+L PY +LL++Q LTE+LTWHWQSPVWLVTPVVYE+YR+LQLMRGL L AE++AP W+VH +RGLV WW+LILG+QLMRVAWFAGF S+ Q P S
Sbjct: 10 QVQVLKWPIWLLGPSVLLTSGMAPTLWLPLSSVFLGSNVVSLLSLIGLDCIFNLGATLFLLMADSCARPKDPSQSCNSKPPFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLASLQPQIPFLSSAVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWVVHMLRGLVSWWVLILGMQLMRVAWFAGFASRTTTGQQPQS 232
BLAST of orange1.1g022138m vs. TAIR10
Match: AT3G60590.1 (| chr3:22399043-22399753 FORWARD LENGTH=237) HSP 1 Score: 344.354 bits (882), Expect = 5.388e-95 Identity = 156/223 (69.96%), Postives = 189/223 (84.75%), Query Frame = 1 Query: 238 QLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGF---LQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPAS 897
Q+Q LKWP+WLLGP +LL +GM PTLWLP+SS+FLG N+ SLLSLIGLDCIFN+GATLFLLMADSCAR K+ +++CNSKPPFSYKFWNM + GF++P+L+LFGSQ G LQPQ+PF+ AV+L PY +LL++Q LTE+LTWHWQSPVWLVTPVVYE+YR+LQLMRGL L AE++AP W+VH +RGLV WW+LILG+QLMRVAWFAGF S+ Q P S
Sbjct: 10 QVQVLKWPIWLLGPSVLLTSGMAPTLWLPLSSVFLGSNVVSLLSLIGLDCIFNLGATLFLLMADSCARPKDPSQSCNSKPPFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLASLQPQIPFLSSAVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWVVHMLRGLVSWWVLILGMQLMRVAWFAGFASRTTTGQQPQS 232
BLAST of orange1.1g022138m vs. TAIR10
Match: AT5G63040.2 (| chr5:25288950-25290326 FORWARD LENGTH=367) HSP 1 Score: 58.9214 bits (141), Expect = 4.521e-9 Identity = 65/281 (23.13%), Postives = 115/281 (40.93%), Query Frame = 1 Query: 91 TSHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVT--DANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPP-FSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKL---------GAELSAPAWIVHTVRGLVCWWILILGV-QLMRVAWFAGFTSQARRQQS 888
T P DD N+N +S N P KTE++ P +L +WL+GP +L+ + ++P ++L +S++F + L L + +F G FLL+ D + P + ++ +IP++ + GF+ P A L PYL+ + +Q E + SP + P++++ YR+ QL R +L GAE + + G + I +LGV + ++ F + S + QS
Sbjct: 102 TEATPRDDDSTIQYNRNDGKPGFISFYN----PRNKTEDIIIPPETQSPWGRL------LWLIGPAVLVSSFILPPVYLRRIVSAVFEDSLLTDFLILFFTEALFYCGVAAFLLIIDRSRKGSGKVPQNRINPSQLGQRISSVATLVLSLMIPMVTM-----GFVWPWTGPAASATL-APYLVGIVVQFAFEQYARYRNSPSSPIIPIIFQVYRLHQLNRAAQLVTALSFTVKGAEATVNNLAIKKSLGTLLNVIQVLGVISIWSISSFLMWLSSPSQNQS 366
BLAST of orange1.1g022138m vs. TAIR10
Match: AT5G63040.1 (| chr5:25288504-25290326 FORWARD LENGTH=367) HSP 1 Score: 58.9214 bits (141), Expect = 4.521e-9 Identity = 65/281 (23.13%), Postives = 115/281 (40.93%), Query Frame = 1 Query: 91 TSHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVT--DANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPP-FSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKL---------GAELSAPAWIVHTVRGLVCWWILILGV-QLMRVAWFAGFTSQARRQQS 888
T P DD N+N +S N P KTE++ P +L +WL+GP +L+ + ++P ++L +S++F + L L + +F G FLL+ D + P + ++ +IP++ + GF+ P A L PYL+ + +Q E + SP + P++++ YR+ QL R +L GAE + + G + I +LGV + ++ F + S + QS
Sbjct: 102 TEATPRDDDSTIQYNRNDGKPGFISFYN----PRNKTEDIIIPPETQSPWGRL------LWLIGPAVLVSSFILPPVYLRRIVSAVFEDSLLTDFLILFFTEALFYCGVAAFLLIIDRSRKGSGKVPQNRINPSQLGQRISSVATLVLSLMIPMVTM-----GFVWPWTGPAASATL-APYLVGIVVQFAFEQYARYRNSPSSPIIPIIFQVYRLHQLNRAAQLVTALSFTVKGAEATVNNLAIKKSLGTLLNVIQVLGVISIWSISSFLMWLSSPSQNQS 366
BLAST of orange1.1g022138m vs. Populus trichicarpa v2.0
Match: POPTR_0176s00200.1 () HSP 1 Score: 454.136 bits (1167), Expect = 5.495e-128 Identity = 225/332 (67.77%), Postives = 260/332 (78.31%), Query Frame = 1 Query: 1 MASLAQAPSAMSTVGVLWTLPRSMRL----------------VNFKT--------------SHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASADG 906
MASL +AP +ST+ R ++L VN T ++APT DA +L K SNIFETL S++TAEAPAT +EE+TD NQ LVQ QFLKWPMWLLGP +LL TGMVPTLWLP+SS+FLGPNIASLLSLIGLDCIFN+GATLFLLMADSC+RSKN ++CNSKPP SYKFWNMVA +GF+IPL+ L GSQKG LQPQLPFIPFAVLLGPY+LLLS+QILTE+LTWHWQSPVWLVTPVVYESYR+LQLMRGLKLGAELSAP W++H +RGLV WWILILGVQLM VAWFAGF +Q+++Q SPA++ G
Sbjct: 1 MASLVKAPPTLSTINSHQVHLRKLKLLSNLNMHHGLRFPRIHVNHTTVCCTKLTPWEPSPVTYAPTIDASGNLLKKTSNIFETLKSEDTAEAPATNSEELTDTKNQSLVQFQFLKWPMWLLGPSLLLTTGMVPTLWLPLSSVFLGPNIASLLSLIGLDCIFNLGATLFLLMADSCSRSKNQAQSCNSKPPLSYKFWNMVATVSGFVIPLMALLGSQKGTLQPQLPFIPFAVLLGPYMLLLSVQILTELLTWHWQSPVWLVTPVVYESYRLLQLMRGLKLGAELSAPTWMLHMIRGLVSWWILILGVQLMSVAWFAGFAAQSQQQHSPAASGG 332
BLAST of orange1.1g022138m vs. Populus trichicarpa v2.0
Match: POPTR_0014s05990.2 () HSP 1 Score: 447.973 bits (1151), Expect = 3.938e-126 Identity = 222/332 (66.87%), Postives = 258/332 (77.71%), Query Frame = 1 Query: 1 MASLAQAPSAMSTVGVLWTLPRSMRL----------------VNFKT--------------SHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASADG 906
MASL +AP +ST+ R ++L VN T ++APT DA +L K SNIFETL S++TAEAPAT +EE+TD NQ LVQ QFLKWPMWLLGP +LL TGMVPTLWLP+SS+FLGPNIASLLSLIGLDCIFN+GATLFLLMADSC+RSKN + CNSKPP SYKFWN+VA +GF+IPL+ L GSQKG L PQLPFIPFAVLLGPY+LLLS+QILTE+LTWHWQSPVWLVTPVVYESYR+LQLMRGLKLGAELSAP W++H +RGLV WWILILGVQLM VAWFAGF +++++Q SPA++ G
Sbjct: 1 MASLVKAPPTLSTINSHQVHLRKLKLLSNLNMHHGLRFPRIHVNHTTVCCTKLTPWEPSPVTYAPTIDASGNLLKKTSNIFETLKSEDTAEAPATNSEELTDTKNQSLVQFQFLKWPMWLLGPSLLLTTGMVPTLWLPLSSVFLGPNIASLLSLIGLDCIFNLGATLFLLMADSCSRSKNQAQTCNSKPPLSYKFWNVVATVSGFVIPLMALLGSQKGTLLPQLPFIPFAVLLGPYMLLLSVQILTELLTWHWQSPVWLVTPVVYESYRLLQLMRGLKLGAELSAPTWMLHMIRGLVSWWILILGVQLMSVAWFAGFAARSQQQHSPAASGG 332
BLAST of orange1.1g022138m vs. Populus trichicarpa v2.0
Match: POPTR_0014s05990.1 () HSP 1 Score: 447.973 bits (1151), Expect = 3.938e-126 Identity = 222/332 (66.87%), Postives = 258/332 (77.71%), Query Frame = 1 Query: 1 MASLAQAPSAMSTVGVLWTLPRSMRL----------------VNFKT--------------SHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASADG 906
MASL +AP +ST+ R ++L VN T ++APT DA +L K SNIFETL S++TAEAPAT +EE+TD NQ LVQ QFLKWPMWLLGP +LL TGMVPTLWLP+SS+FLGPNIASLLSLIGLDCIFN+GATLFLLMADSC+RSKN + CNSKPP SYKFWN+VA +GF+IPL+ L GSQKG L PQLPFIPFAVLLGPY+LLLS+QILTE+LTWHWQSPVWLVTPVVYESYR+LQLMRGLKLGAELSAP W++H +RGLV WWILILGVQLM VAWFAGF +++++Q SPA++ G
Sbjct: 21 MASLVKAPPTLSTINSHQVHLRKLKLLSNLNMHHGLRFPRIHVNHTTVCCTKLTPWEPSPVTYAPTIDASGNLLKKTSNIFETLKSEDTAEAPATNSEELTDTKNQSLVQFQFLKWPMWLLGPSLLLTTGMVPTLWLPLSSVFLGPNIASLLSLIGLDCIFNLGATLFLLMADSCSRSKNQAQTCNSKPPLSYKFWNVVATVSGFVIPLMALLGSQKGTLLPQLPFIPFAVLLGPYMLLLSVQILTELLTWHWQSPVWLVTPVVYESYRLLQLMRGLKLGAELSAPTWMLHMIRGLVSWWILILGVQLMSVAWFAGFAARSQQQHSPAASGG 352
BLAST of orange1.1g022138m vs. Populus trichicarpa v2.0
Match: POPTR_0176s00220.1 () HSP 1 Score: 99.3673 bits (246), Expect = 3.436e-21 Identity = 47/74 (63.51%), Postives = 56/74 (75.68%), Query Frame = 1 Query: 94 SHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTL 315
++APT DA +L K SNIFETL S++TAEAPAT +EE+TD NQ LVQ QFL WPMWLLGP +LL TG+ L
Sbjct: 31 TYAPTIDASGNLLKKTSNIFETLKSEDTAEAPATNSEELTDTKNQSLVQFQFLHWPMWLLGPSLLLTTGLAKIL 104
BLAST of orange1.1g022138m vs. Populus trichicarpa v2.0
Match: POPTR_0012s09060.2 () HSP 1 Score: 67.781 bits (164), Expect = 1.108e-11 Identity = 50/184 (27.17%), Postives = 86/184 (46.74%), Query Frame = 1 Query: 262 MWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSK----PPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRG 795
+W +GP +L+ + + P+L+L +S++F + L L + +F G +FLL+ D R + N+ P + ++ A IIP++ + G + P A L PYL+ + +Q E + +SP W V P++++ YR+ QL R +L LS TVRG
Sbjct: 147 LWFIGPAVLVASFIFPSLYLRKILSAVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDHLRRPVEPLSSVNNNRTLAPHLGQRISSVAALVLSLIIPMVTM-----GLVWPWTGPAASATL-APYLVGIVVQFAFEQYARYRKSPSWPVIPIIFQVYRLHQLNRAAQLVTALS------FTVRG 318
BLAST of orange1.1g022138m vs. Populus trichicarpa v2.0
Match: POPTR_0012s09060.1 () HSP 1 Score: 67.781 bits (164), Expect = 1.108e-11 Identity = 50/184 (27.17%), Postives = 86/184 (46.74%), Query Frame = 1 Query: 262 MWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSK----PPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRG 795
+W +GP +L+ + + P+L+L +S++F + L L + +F G +FLL+ D R + N+ P + ++ A IIP++ + G + P A L PYL+ + +Q E + +SP W V P++++ YR+ QL R +L LS TVRG
Sbjct: 147 LWFIGPAVLVASFIFPSLYLRKILSAVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDHLRRPVEPLSSVNNNRTLAPHLGQRISSVAALVLSLIIPMVTM-----GLVWPWTGPAASATL-APYLVGIVVQFAFEQYARYRKSPSWPVIPIIFQVYRLHQLNRAAQLVTALS------FTVRG 318
BLAST of orange1.1g022138m vs. Malus x domestica v1.0
Match: MDP0000942272 (MDP0000942272) HSP 1 Score: 437.573 bits (1124), Expect = 7.208e-123 Identity = 207/277 (74.73%), Postives = 238/277 (85.92%), Query Frame = 1 Query: 73 RLVNFKTSHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASAD 903
RL S+APT+ A LNK SNIFETLSS + EAP T +E TDA+NQ + Q LKWPMWLLGP +LL TGMVPTLWLPISSIFLGPNIASLLSL+GLDCI+N+GATLFLLMADSCAR K +AC SKPPFSY+FWN+VA +GFI+PL+M FGSQKGFLQPQLPFI FAVLLGPYLLL+S+QILTEMLTWHWQSPVWLVTPVVYESYR+LQLMRGLKLG ELSAPAW++HT+RGLV WW+LILG+QLMRVAWFAGF+++ R+Q+ P++ D
Sbjct: 55 RLEPSSASYAPTESAGDNFLNKTSNIFETLSSISNDEAPETNSETHTDASNQTKTEFQVLKWPMWLLGPSLLLITGMVPTLWLPISSIFLGPNIASLLSLVGLDCIYNLGATLFLLMADSCARPKQPEQACKSKPPFSYQFWNIVATVSGFIVPLIMAFGSQKGFLQPQLPFISFAVLLGPYLLLISVQILTEMLTWHWQSPVWLVTPVVYESYRLLQLMRGLKLGTELSAPAWMMHTIRGLVSWWVLILGMQLMRVAWFAGFSARTRKQEPPSADD 331
BLAST of orange1.1g022138m vs. Malus x domestica v1.0
Match: MDP0000300997 (MDP0000300997) HSP 1 Score: 70.8626 bits (172), Expect = 1.772e-12 Identity = 59/206 (28.64%), Postives = 92/206 (44.66%), Query Frame = 1 Query: 196 KTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSK----PPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRG 795
K EE NN Q L W +GP +LL + + P+L+L +S+IF + L L + +F G +FLL+ D R+ S P + ++ + IIP++ + G++ P A L PYL+ + +Q E + +SP W V PV+++ YR+ QL R +L LS TVRG
Sbjct: 148 KKEEEVSTNNPERKQNSLL----WFIGPAVLLASFIFPSLYLRKILSTIFEDSLLTDFLILFFTEALFYSGVAVFLLLIDRLRRTTEPELVVPSNRTPAPQLGQRISSVASLVLSLIIPMVTM-----GYVWPWTGPAASATL-APYLVGIVVQFAFEQYARYKKSPSWPVIPVIFQVYRLHQLNRAAQLVTALS------FTVRG 337
BLAST of orange1.1g022138m vs. Malus x domestica v1.0
Match: MDP0000826832 (MDP0000826832) HSP 1 Score: 55.4546 bits (132), Expect = 7.705e-8 Identity = 47/214 (21.96%), Postives = 86/214 (40.19%), Query Frame = 1 Query: 262 MWLLGPCILLGTGMVPTLWL--PISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQL------PFIPFAVLLG--PYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQL-------------MRGLKLGAELSAPA------WIVHTVRGLVCWWIL 816
+W + P L+ + ++P ++ + + I +++ + + +F +G +FLL+ D R FS K W ++ G++ + G + + P P + F L+ P+L+ Q+ EM+ QS W + P+++E YR+ QL M GL EL + + V LVC W L
Sbjct: 124 IWFIAPVALISSLILPQFFIGNAVEAFLKDETIVEIVTSLSYEAVFYVGLAIFLLVTDRVQRPYLQ---------FSPKRWGLITGLRGYLTSAFLTTGFK--VMAPLFAVYVTWPLLGFPALISVIPFLVGCVAQLAFEMVLEKRQSSCWPLVPIIFEVYRLYQLTKATSFIQNLMFAMNGLPTSPELLEKSGALFAMMVTFRVVSLVCLWSL 326 The following BLAST results are available for this feature:
BLAST of orange1.1g022138m vs. Prunus Persica v1.0
Analysis Date: 2011-02-04 (BLAST: Citrus sinensis gene models CDS vs Prunus persica proteins) Total hits: 2 Position : 0 Zoom : x 1
BLAST of orange1.1g022138m vs. Vitis vinifera
Analysis Date: 2011-02-04 (BLAST: Citrus sinensis gene models CDS vs Vitis vinifera proteins) Total hits: 3 Position : 0 Zoom : x 1
BLAST of orange1.1g022138m vs. TAIR10
Analysis Date: 2011-02-04 (BLAST: Citrus sinensis gene models CDS vs TAIR 10 proteins) Total hits: 6 Position : 0 Zoom : x 1
BLAST of orange1.1g022138m vs. Populus trichicarpa v2.0
Analysis Date: 2011-02-04 (BLAST: Citrus sinensis gene models CDS vs Populus trichocarpa proteins) Total hits: 6 Position : 0 Zoom : x 1
BLAST of orange1.1g022138m vs. Malus x domestica v1.0
Analysis Date: 2011-02-04 (BLAST: Citrus sinensis gene models CDS vs Malus x domestica v1.0 proteins) Total hits: 3 Position : 0 Zoom : x 1
InterPro
Analysis Name: C. sinensis v1.1 peptides
Date Performed: 2018-06-22 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >PAC:18136401 ID=PAC:18136401; Name=orange1.1g022138m; organism=Citrus sinensis; type=mRNA; length=1986bpback to top protein sequence of orange1.1g022138m >PAC:18136401 ID=PAC:18136401; Name=orange1.1g022138m; organism=Citrus sinensis; type=polypeptide; length=303bpback to top mRNA from alignment at scaffold00001:952983..954968+ Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1986bp; location=Sequence derived from: scaffold00001:952983..954968+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at scaffold00001:952983..954968+ >PAC:18136401 ID=PAC:18136401; Name=orange1.1g022138m; organism=Citrus sinensis; type=CDS; length=907bp; location=Sequence derived from: scaffold00001:952983..954968+ (Citrus sinensisback to top |