orange1.1g022138m, PAC:18136401 (mRNA) Citrus sinensis

Transcript Overview


Name	orange1.1g022138m
Unique Name	PAC:18136401
Type	mRNA
Organism	Citrus sinensis (Sweet orange)
Sequence length	1986

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus sinensis gene models CDS vs TAIR 10 proteins	2011-02-04
BLAST: Citrus sinensis gene models CDS vs Prunus persica proteins	2011-02-04
BLAST: Citrus sinensis gene models CDS vs Vitis vinifera proteins	2011-02-04
BLAST: Citrus sinensis gene models CDS vs Populus trichocarpa proteins	2011-02-04
BLAST: Citrus sinensis gene models CDS vs Malus x domestica v1.0 proteins	2011-02-04
Citrus sinensis genome v1.0 (JGI)	2011-02-01
C. sinensis v1.1 peptides	2018-06-22
Citrus sinensis genome v1.1 (JGI)	2014-07-01

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
orange1.1g019992m.g	orange1.1g019992m.g	Citrus sinensis	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
PAC:18136401-five_prime_UTR-scaffold00001:952982..953049	PAC:18136401-five_prime_UTR-scaffold00001:952982..953049	Citrus sinensis	five_prime_UTR
PAC:18136401-five_prime_UTR-scaffold00001:953666..953713	PAC:18136401-five_prime_UTR-scaffold00001:953666..953713	Citrus sinensis	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
PAC:18136401-CDS-scaffold00001:953714..953804	PAC:18136401-CDS-scaffold00001:953714..953804	Citrus sinensis	CDS
PAC:18136401-CDS-scaffold00001:953895..954712	PAC:18136401-CDS-scaffold00001:953895..954712	Citrus sinensis	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
PAC:18136401-three_prime_UTR-scaffold00001:954713..954968	PAC:18136401-three_prime_UTR-scaffold00001:954713..954968	Citrus sinensis	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
orange1.1g022138m	PAC:18136401	Citrus sinensis	polypeptide

Cross References

External references for this mRNA


Database	Accession
phytozome	18136401

Homology

[Close]

BLAST of orange1.1g022138m vs. Prunus Persica v1.0
Match: ppa008427m ()

HSP 1 Score: 429.483 bits (1103), Expect = 1.028e-120
Identity = 203/270 (75.19%), Postives = 233/270 (86.30%), Query Frame = 1

Query:   94 SHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASAD 903
            ++ PT+ AD   LNK +NIFETLSS +T EA  T +E+  DA+NQ   ++QFLKWPMWLLGP +LL TGMVPTLWLP+SSIFLGPNIASLLSL+GLDCIFN+GATLFLLMADSCAR K   +AC SKPPFSY+FWNMVA  TGFIIPL+M FGSQKGFLQPQLP I F+VL+GPYLLL+S+QILTEMLTWHWQSPVWLVTPVVYE+YR+LQLMRGLKLG ELSAPAW++HT+RGLV WW+LIL +QLMRVAW+AGFTS+ R QQ   S D
Sbjct:   62 TYTPTESADDSFLNKTTNIFETLSSVSTDEAQETNSEKRIDASNQTRPEVQFLKWPMWLLGPSLLLITGMVPTLWLPLSSIFLGPNIASLLSLVGLDCIFNLGATLFLLMADSCARPKLPAQACKSKPPFSYQFWNMVATVTGFIIPLMMAFGSQKGFLQPQLPLISFSVLMGPYLLLISVQILTEMLTWHWQSPVWLVTPVVYEAYRLLQLMRGLKLGTELSAPAWMMHTIRGLVSWWVLILSMQLMRVAWYAGFTSRTRHQQQRPSDD 331

[Close]

BLAST of orange1.1g022138m vs. Prunus Persica v1.0
Match: ppa007436m ()

HSP 1 Score: 72.0182 bits (175), Expect = 4.164e-13
Identity = 60/206 (29.13%), Postives = 92/206 (44.66%), Query Frame = 1

Query:  196 KTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSK----PPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRG 795
            K EE    NN    Q   L    W +GP +LL + + P+L+L   +S++F    +   L L   + IF  G  +FLL+ D   R        +S     P    +  ++ A     IIP++ +     G++ P       A L  PYL+ + +Q   E    + +SP W V PV+++ YR+ QL R  +L   LS       TVRG
Sbjct:  131 KREEEVSTNNPERNQNNLL----WFIGPAVLLASFIFPSLYLRKILSTVFEDSLLTDFLILFFTEAIFYSGVAVFLLLIDHLRRPTEPELIVHSNRTLTPQLGQRISSVAALVLSLIIPMVTM-----GYVWPWTGPAASATL-APYLVGIVVQFAFEQCARYKKSPSWPVIPVIFQVYRLHQLNRAAQLVTALS------FTVRG 320

[Close]

BLAST of orange1.1g022138m vs. Vitis vinifera
Match: GSVIVT01027684001 (assembled CDS)

HSP 1 Score: 445.662 bits (1145), Expect = 1.179e-125
Identity = 224/332 (67.47%), Postives = 256/332 (77.11%), Query Frame = 1

Query:    1 MASLAQAPSAMSTVGVLWTLPRSMRL--------------VNFK----------------TSHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASADG 906
            MASLAQAPS M++V V     R M+L              +  K                 +++PTD+     L   SNIFETL+SD+TAEAP T TEE+   +NQ   QLQFLKWPMWLLGP +LL TGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFN+GATLFLLMAD+CAR KN  +  NSK PFSY+FWN+VA  TGF++PL++ FGSQ GF QPQLPFIPFAVL+GPYLLLLS+QILTEMLTWHWQSPVWLVTPVVYE+YRVLQLMRGLKLGAELSAPAW++HTVRGLVCWW+LILG+Q+MRVAWFAGFT+ A  Q+S   ADG
Sbjct:   93 MASLAQAPSTMASVTVPNVHHRGMKLFQPSISLHGFTFPHIRIKHPPVCCTKLTPWEPSPVTYSPTDEKGSDFLRGTSNIFETLNSDDTAEAPVTNTEELIHTSNQSSGQLQFLKWPMWLLGPSLLLATGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNLGATLFLLMADACARPKNLAQPLNSKAPFSYQFWNVVATITGFVVPLIVFFGSQNGFFQPQLPFIPFAVLMGPYLLLLSVQILTEMLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLGAELSAPAWMMHTVRGLVCWWVLILGMQVMRVAWFAGFTAGAWPQKSSTLADG 424

[Close]

BLAST of orange1.1g022138m vs. Vitis vinifera
Match: GSVIVT01007705001 (assembled CDS)

HSP 1 Score: 70.4774 bits (171), Expect = 1.031e-12
Identity = 55/184 (29.89%), Postives = 86/184 (46.74%), Query Frame = 1

Query:  262 MWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSK----PPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRG 795
            +W +GP IL+ + + P+L+L   +S++F    +   L L   + +F  G  +FLL+ D   RS       NS     P   ++  +  A     IIP++ +     G + P       A L  PYL+ + +Q   E    + +SP W V PVV++ YR+ QL R  +L   LS       TVRG
Sbjct:  137 LWFIGPSILVASFIFPSLYLRRILSTVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDRLRRSLEPVSDTNSHRIPAPQLGHRIASGAALVLSLIIPMVTM-----GLVWPWTGPAASATL-APYLVGIVVQFAFEQYARYIKSPSWPVIPVVFQVYRLHQLNRAAQLVTALS------FTVRG 308

[Close]

BLAST of orange1.1g022138m vs. Vitis vinifera
Match: GSVIVT01009618001 (assembled CDS)

HSP 1 Score: 50.8322 bits (120), Expect = 8.455e-7
Identity = 50/214 (23.36%), Postives = 87/214 (40.65%), Query Frame = 1

Query:  262 MWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVL-------LGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRG-----LKLGAELSAPAW--------------IVHTVRGLVCWWILI 819
            +W+L P  L+ + ++P  +L   I +I     +A +++ I  + +F IG   FL + D   R             FS K W ++    G++       G  K F      ++ + VL       + P+L+  + Q+  EM      S  W + P+++E YR+ QL +      + + A   AP                +   V GLVC W L+
Sbjct:  136 LWVLAPVALISSLVLPQFFLDSAIEAILKDEVLAEIVATIFSEAMFYIGLATFLHVTDHVQRPYLQ---------FSPKRWGLITGLKGYLTTAFFTMGF-KIFAPFFAVYVTWPVLGPSALVAVAPFLVGCAAQLAFEMRLSKRGSSCWPLVPIIFEVYRLYQLSKAAHFMDILILAMKEAPVTPDIVERSGALVAMVVTFQVLGLVCLWSLM 339

[Close]

BLAST of orange1.1g022138m vs. TAIR10
Match: AT3G60590.2 (| chr3:22398764-22399753 FORWARD LENGTH=330)

HSP 1 Score: 358.607 bits (919), Expect = 2.761e-99
Identity = 167/270 (61.85%), Postives = 212/270 (78.52%), Query Frame = 1

Query:   97 HAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGF---LQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPAS 897
            HA  ++A   +L+K +N+FE++ S++  E     +     A  +   Q+Q LKWP+WLLGP +LL +GM PTLWLP+SS+FLG N+ SLLSLIGLDCIFN+GATLFLLMADSCAR K+ +++CNSKPPFSYKFWNM +   GF++P+L+LFGSQ G    LQPQ+PF+  AV+L PY +LL++Q LTE+LTWHWQSPVWLVTPVVYE+YR+LQLMRGL L AE++AP W+VH +RGLV WW+LILG+QLMRVAWFAGF S+    Q P S
Sbjct:   61 HASAEEAADIVLDKTANVFESIVSESAEEEKVDMS-----AQQRTNSQVQVLKWPIWLLGPSVLLTSGMAPTLWLPLSSVFLGSNVVSLLSLIGLDCIFNLGATLFLLMADSCARPKDPSQSCNSKPPFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLASLQPQIPFLSSAVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWVVHMLRGLVSWWVLILGMQLMRVAWFAGFASRTTTGQQPQS 325

[Close]

BLAST of orange1.1g022138m vs. TAIR10
Match: AT3G60590.3 (| chr3:22398228-22399753 FORWARD LENGTH=405)

HSP 1 Score: 358.607 bits (919), Expect = 2.761e-99
Identity = 167/270 (61.85%), Postives = 212/270 (78.52%), Query Frame = 1

Query:   97 HAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGF---LQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPAS 897
            HA  ++A   +L+K +N+FE++ S++  E     +     A  +   Q+Q LKWP+WLLGP +LL +GM PTLWLP+SS+FLG N+ SLLSLIGLDCIFN+GATLFLLMADSCAR K+ +++CNSKPPFSYKFWNM +   GF++P+L+LFGSQ G    LQPQ+PF+  AV+L PY +LL++Q LTE+LTWHWQSPVWLVTPVVYE+YR+LQLMRGL L AE++AP W+VH +RGLV WW+LILG+QLMRVAWFAGF S+    Q P S
Sbjct:  136 HASAEEAADIVLDKTANVFESIVSESAEEEKVDMS-----AQQRTNSQVQVLKWPIWLLGPSVLLTSGMAPTLWLPLSSVFLGSNVVSLLSLIGLDCIFNLGATLFLLMADSCARPKDPSQSCNSKPPFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLASLQPQIPFLSSAVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWVVHMLRGLVSWWVLILGMQLMRVAWFAGFASRTTTGQQPQS 400

[Close]

BLAST of orange1.1g022138m vs. TAIR10
Match: AT3G60590.4 (| chr3:22399043-22399753 FORWARD LENGTH=237)

HSP 1 Score: 344.354 bits (882), Expect = 5.388e-95
Identity = 156/223 (69.96%), Postives = 189/223 (84.75%), Query Frame = 1

Query:  238 QLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGF---LQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPAS 897
            Q+Q LKWP+WLLGP +LL +GM PTLWLP+SS+FLG N+ SLLSLIGLDCIFN+GATLFLLMADSCAR K+ +++CNSKPPFSYKFWNM +   GF++P+L+LFGSQ G    LQPQ+PF+  AV+L PY +LL++Q LTE+LTWHWQSPVWLVTPVVYE+YR+LQLMRGL L AE++AP W+VH +RGLV WW+LILG+QLMRVAWFAGF S+    Q P S
Sbjct:   10 QVQVLKWPIWLLGPSVLLTSGMAPTLWLPLSSVFLGSNVVSLLSLIGLDCIFNLGATLFLLMADSCARPKDPSQSCNSKPPFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLASLQPQIPFLSSAVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWVVHMLRGLVSWWVLILGMQLMRVAWFAGFASRTTTGQQPQS 232

[Close]

BLAST of orange1.1g022138m vs. TAIR10
Match: AT3G60590.1 (| chr3:22399043-22399753 FORWARD LENGTH=237)

HSP 1 Score: 344.354 bits (882), Expect = 5.388e-95
Identity = 156/223 (69.96%), Postives = 189/223 (84.75%), Query Frame = 1

Query:  238 QLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGF---LQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPAS 897
            Q+Q LKWP+WLLGP +LL +GM PTLWLP+SS+FLG N+ SLLSLIGLDCIFN+GATLFLLMADSCAR K+ +++CNSKPPFSYKFWNM +   GF++P+L+LFGSQ G    LQPQ+PF+  AV+L PY +LL++Q LTE+LTWHWQSPVWLVTPVVYE+YR+LQLMRGL L AE++AP W+VH +RGLV WW+LILG+QLMRVAWFAGF S+    Q P S
Sbjct:   10 QVQVLKWPIWLLGPSVLLTSGMAPTLWLPLSSVFLGSNVVSLLSLIGLDCIFNLGATLFLLMADSCARPKDPSQSCNSKPPFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLASLQPQIPFLSSAVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWVVHMLRGLVSWWVLILGMQLMRVAWFAGFASRTTTGQQPQS 232

[Close]

BLAST of orange1.1g022138m vs. TAIR10
Match: AT5G63040.2 (| chr5:25288950-25290326 FORWARD LENGTH=367)

HSP 1 Score: 58.9214 bits (141), Expect = 4.521e-9
Identity = 65/281 (23.13%), Postives = 115/281 (40.93%), Query Frame = 1

Query:   91 TSHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVT--DANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPP-FSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKL---------GAELSAPAWIVHTVRGLVCWWILILGV-QLMRVAWFAGFTSQARRQQS 888
            T   P DD      N+N      +S  N    P  KTE++        P  +L      +WL+GP +L+ + ++P ++L   +S++F    +   L L   + +F  G   FLL+ D   +           P     +  ++       +IP++ +     GF+ P       A L  PYL+ + +Q   E    +  SP   + P++++ YR+ QL R  +L         GAE +     +    G +   I +LGV  +  ++ F  + S   + QS
Sbjct:  102 TEATPRDDDSTIQYNRNDGKPGFISFYN----PRNKTEDIIIPPETQSPWGRL------LWLIGPAVLVSSFILPPVYLRRIVSAVFEDSLLTDFLILFFTEALFYCGVAAFLLIIDRSRKGSGKVPQNRINPSQLGQRISSVATLVLSLMIPMVTM-----GFVWPWTGPAASATL-APYLVGIVVQFAFEQYARYRNSPSSPIIPIIFQVYRLHQLNRAAQLVTALSFTVKGAEATVNNLAIKKSLGTLLNVIQVLGVISIWSISSFLMWLSSPSQNQS 366

[Close]

BLAST of orange1.1g022138m vs. TAIR10
Match: AT5G63040.1 (| chr5:25288504-25290326 FORWARD LENGTH=367)

HSP 1 Score: 58.9214 bits (141), Expect = 4.521e-9
Identity = 65/281 (23.13%), Postives = 115/281 (40.93%), Query Frame = 1

Query:   91 TSHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVT--DANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPP-FSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKL---------GAELSAPAWIVHTVRGLVCWWILILGV-QLMRVAWFAGFTSQARRQQS 888
            T   P DD      N+N      +S  N    P  KTE++        P  +L      +WL+GP +L+ + ++P ++L   +S++F    +   L L   + +F  G   FLL+ D   +           P     +  ++       +IP++ +     GF+ P       A L  PYL+ + +Q   E    +  SP   + P++++ YR+ QL R  +L         GAE +     +    G +   I +LGV  +  ++ F  + S   + QS
Sbjct:  102 TEATPRDDDSTIQYNRNDGKPGFISFYN----PRNKTEDIIIPPETQSPWGRL------LWLIGPAVLVSSFILPPVYLRRIVSAVFEDSLLTDFLILFFTEALFYCGVAAFLLIIDRSRKGSGKVPQNRINPSQLGQRISSVATLVLSLMIPMVTM-----GFVWPWTGPAASATL-APYLVGIVVQFAFEQYARYRNSPSSPIIPIIFQVYRLHQLNRAAQLVTALSFTVKGAEATVNNLAIKKSLGTLLNVIQVLGVISIWSISSFLMWLSSPSQNQS 366

[Close]

BLAST of orange1.1g022138m vs. Populus trichicarpa v2.0
Match: POPTR_0176s00200.1 ()

HSP 1 Score: 454.136 bits (1167), Expect = 5.495e-128
Identity = 225/332 (67.77%), Postives = 260/332 (78.31%), Query Frame = 1

Query:    1 MASLAQAPSAMSTVGVLWTLPRSMRL----------------VNFKT--------------SHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASADG 906
            MASL +AP  +ST+       R ++L                VN  T              ++APT DA   +L K SNIFETL S++TAEAPAT +EE+TD  NQ LVQ QFLKWPMWLLGP +LL TGMVPTLWLP+SS+FLGPNIASLLSLIGLDCIFN+GATLFLLMADSC+RSKN  ++CNSKPP SYKFWNMVA  +GF+IPL+ L GSQKG LQPQLPFIPFAVLLGPY+LLLS+QILTE+LTWHWQSPVWLVTPVVYESYR+LQLMRGLKLGAELSAP W++H +RGLV WWILILGVQLM VAWFAGF +Q+++Q SPA++ G
Sbjct:    1 MASLVKAPPTLSTINSHQVHLRKLKLLSNLNMHHGLRFPRIHVNHTTVCCTKLTPWEPSPVTYAPTIDASGNLLKKTSNIFETLKSEDTAEAPATNSEELTDTKNQSLVQFQFLKWPMWLLGPSLLLTTGMVPTLWLPLSSVFLGPNIASLLSLIGLDCIFNLGATLFLLMADSCSRSKNQAQSCNSKPPLSYKFWNMVATVSGFVIPLMALLGSQKGTLQPQLPFIPFAVLLGPYMLLLSVQILTELLTWHWQSPVWLVTPVVYESYRLLQLMRGLKLGAELSAPTWMLHMIRGLVSWWILILGVQLMSVAWFAGFAAQSQQQHSPAASGG 332

[Close]

BLAST of orange1.1g022138m vs. Populus trichicarpa v2.0
Match: POPTR_0014s05990.2 ()

HSP 1 Score: 447.973 bits (1151), Expect = 3.938e-126
Identity = 222/332 (66.87%), Postives = 258/332 (77.71%), Query Frame = 1

Query:    1 MASLAQAPSAMSTVGVLWTLPRSMRL----------------VNFKT--------------SHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASADG 906
            MASL +AP  +ST+       R ++L                VN  T              ++APT DA   +L K SNIFETL S++TAEAPAT +EE+TD  NQ LVQ QFLKWPMWLLGP +LL TGMVPTLWLP+SS+FLGPNIASLLSLIGLDCIFN+GATLFLLMADSC+RSKN  + CNSKPP SYKFWN+VA  +GF+IPL+ L GSQKG L PQLPFIPFAVLLGPY+LLLS+QILTE+LTWHWQSPVWLVTPVVYESYR+LQLMRGLKLGAELSAP W++H +RGLV WWILILGVQLM VAWFAGF +++++Q SPA++ G
Sbjct:    1 MASLVKAPPTLSTINSHQVHLRKLKLLSNLNMHHGLRFPRIHVNHTTVCCTKLTPWEPSPVTYAPTIDASGNLLKKTSNIFETLKSEDTAEAPATNSEELTDTKNQSLVQFQFLKWPMWLLGPSLLLTTGMVPTLWLPLSSVFLGPNIASLLSLIGLDCIFNLGATLFLLMADSCSRSKNQAQTCNSKPPLSYKFWNVVATVSGFVIPLMALLGSQKGTLLPQLPFIPFAVLLGPYMLLLSVQILTELLTWHWQSPVWLVTPVVYESYRLLQLMRGLKLGAELSAPTWMLHMIRGLVSWWILILGVQLMSVAWFAGFAARSQQQHSPAASGG 332

[Close]

BLAST of orange1.1g022138m vs. Populus trichicarpa v2.0
Match: POPTR_0014s05990.1 ()

HSP 1 Score: 447.973 bits (1151), Expect = 3.938e-126
Identity = 222/332 (66.87%), Postives = 258/332 (77.71%), Query Frame = 1

Query:    1 MASLAQAPSAMSTVGVLWTLPRSMRL----------------VNFKT--------------SHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASADG 906
            MASL +AP  +ST+       R ++L                VN  T              ++APT DA   +L K SNIFETL S++TAEAPAT +EE+TD  NQ LVQ QFLKWPMWLLGP +LL TGMVPTLWLP+SS+FLGPNIASLLSLIGLDCIFN+GATLFLLMADSC+RSKN  + CNSKPP SYKFWN+VA  +GF+IPL+ L GSQKG L PQLPFIPFAVLLGPY+LLLS+QILTE+LTWHWQSPVWLVTPVVYESYR+LQLMRGLKLGAELSAP W++H +RGLV WWILILGVQLM VAWFAGF +++++Q SPA++ G
Sbjct:   21 MASLVKAPPTLSTINSHQVHLRKLKLLSNLNMHHGLRFPRIHVNHTTVCCTKLTPWEPSPVTYAPTIDASGNLLKKTSNIFETLKSEDTAEAPATNSEELTDTKNQSLVQFQFLKWPMWLLGPSLLLTTGMVPTLWLPLSSVFLGPNIASLLSLIGLDCIFNLGATLFLLMADSCSRSKNQAQTCNSKPPLSYKFWNVVATVSGFVIPLMALLGSQKGTLLPQLPFIPFAVLLGPYMLLLSVQILTELLTWHWQSPVWLVTPVVYESYRLLQLMRGLKLGAELSAPTWMLHMIRGLVSWWILILGVQLMSVAWFAGFAARSQQQHSPAASGG 352

[Close]

BLAST of orange1.1g022138m vs. Populus trichicarpa v2.0
Match: POPTR_0176s00220.1 ()

HSP 1 Score: 99.3673 bits (246), Expect = 3.436e-21
Identity = 47/74 (63.51%), Postives = 56/74 (75.68%), Query Frame = 1

Query:   94 SHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTL 315
            ++APT DA   +L K SNIFETL S++TAEAPAT +EE+TD  NQ LVQ QFL WPMWLLGP +LL TG+   L
Sbjct:   31 TYAPTIDASGNLLKKTSNIFETLKSEDTAEAPATNSEELTDTKNQSLVQFQFLHWPMWLLGPSLLLTTGLAKIL 104

[Close]

BLAST of orange1.1g022138m vs. Populus trichicarpa v2.0
Match: POPTR_0012s09060.2 ()

HSP 1 Score: 67.781 bits (164), Expect = 1.108e-11
Identity = 50/184 (27.17%), Postives = 86/184 (46.74%), Query Frame = 1

Query:  262 MWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSK----PPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRG 795
            +W +GP +L+ + + P+L+L   +S++F    +   L L   + +F  G  +FLL+ D   R      + N+     P    +  ++ A     IIP++ +     G + P       A L  PYL+ + +Q   E    + +SP W V P++++ YR+ QL R  +L   LS       TVRG
Sbjct:  147 LWFIGPAVLVASFIFPSLYLRKILSAVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDHLRRPVEPLSSVNNNRTLAPHLGQRISSVAALVLSLIIPMVTM-----GLVWPWTGPAASATL-APYLVGIVVQFAFEQYARYRKSPSWPVIPIIFQVYRLHQLNRAAQLVTALS------FTVRG 318

[Close]

BLAST of orange1.1g022138m vs. Populus trichicarpa v2.0
Match: POPTR_0012s09060.1 ()

HSP 1 Score: 67.781 bits (164), Expect = 1.108e-11
Identity = 50/184 (27.17%), Postives = 86/184 (46.74%), Query Frame = 1

Query:  262 MWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSK----PPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRG 795
            +W +GP +L+ + + P+L+L   +S++F    +   L L   + +F  G  +FLL+ D   R      + N+     P    +  ++ A     IIP++ +     G + P       A L  PYL+ + +Q   E    + +SP W V P++++ YR+ QL R  +L   LS       TVRG
Sbjct:  147 LWFIGPAVLVASFIFPSLYLRKILSAVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDHLRRPVEPLSSVNNNRTLAPHLGQRISSVAALVLSLIIPMVTM-----GLVWPWTGPAASATL-APYLVGIVVQFAFEQYARYRKSPSWPVIPIIFQVYRLHQLNRAAQLVTALS------FTVRG 318

[Close]

BLAST of orange1.1g022138m vs. Malus x domestica v1.0
Match: MDP0000942272 (MDP0000942272)

HSP 1 Score: 437.573 bits (1124), Expect = 7.208e-123
Identity = 207/277 (74.73%), Postives = 238/277 (85.92%), Query Frame = 1

Query:   73 RLVNFKTSHAPTDDADYKILNKNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASAD 903
            RL     S+APT+ A    LNK SNIFETLSS +  EAP T +E  TDA+NQ   + Q LKWPMWLLGP +LL TGMVPTLWLPISSIFLGPNIASLLSL+GLDCI+N+GATLFLLMADSCAR K   +AC SKPPFSY+FWN+VA  +GFI+PL+M FGSQKGFLQPQLPFI FAVLLGPYLLL+S+QILTEMLTWHWQSPVWLVTPVVYESYR+LQLMRGLKLG ELSAPAW++HT+RGLV WW+LILG+QLMRVAWFAGF+++ R+Q+ P++ D
Sbjct:   55 RLEPSSASYAPTESAGDNFLNKTSNIFETLSSISNDEAPETNSETHTDASNQTKTEFQVLKWPMWLLGPSLLLITGMVPTLWLPISSIFLGPNIASLLSLVGLDCIYNLGATLFLLMADSCARPKQPEQACKSKPPFSYQFWNIVATVSGFIVPLIMAFGSQKGFLQPQLPFISFAVLLGPYLLLISVQILTEMLTWHWQSPVWLVTPVVYESYRLLQLMRGLKLGTELSAPAWMMHTIRGLVSWWVLILGMQLMRVAWFAGFSARTRKQEPPSADD 331

[Close]

BLAST of orange1.1g022138m vs. Malus x domestica v1.0
Match: MDP0000300997 (MDP0000300997)

HSP 1 Score: 70.8626 bits (172), Expect = 1.772e-12
Identity = 59/206 (28.64%), Postives = 92/206 (44.66%), Query Frame = 1

Query:  196 KTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSK----PPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVRG 795
            K EE    NN    Q   L    W +GP +LL + + P+L+L   +S+IF    +   L L   + +F  G  +FLL+ D   R+        S     P    +  ++ +     IIP++ +     G++ P       A L  PYL+ + +Q   E    + +SP W V PV+++ YR+ QL R  +L   LS       TVRG
Sbjct:  148 KKEEEVSTNNPERKQNSLL----WFIGPAVLLASFIFPSLYLRKILSTIFEDSLLTDFLILFFTEALFYSGVAVFLLLIDRLRRTTEPELVVPSNRTPAPQLGQRISSVASLVLSLIIPMVTM-----GYVWPWTGPAASATL-APYLVGIVVQFAFEQYARYKKSPSWPVIPVIFQVYRLHQLNRAAQLVTALS------FTVRG 337

[Close]

BLAST of orange1.1g022138m vs. Malus x domestica v1.0
Match: MDP0000826832 (MDP0000826832)

HSP 1 Score: 55.4546 bits (132), Expect = 7.705e-8
Identity = 47/214 (21.96%), Postives = 86/214 (40.19%), Query Frame = 1

Query:  262 MWLLGPCILLGTGMVPTLWL--PISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKNTTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQL------PFIPFAVLLG--PYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQL-------------MRGLKLGAELSAPA------WIVHTVRGLVCWWIL 816
            +W + P  L+ + ++P  ++   + +      I  +++ +  + +F +G  +FLL+ D   R             FS K W ++    G++    +  G +   + P        P + F  L+   P+L+    Q+  EM+    QS  W + P+++E YR+ QL             M GL    EL   +       +   V  LVC W L
Sbjct:  124 IWFIAPVALISSLILPQFFIGNAVEAFLKDETIVEIVTSLSYEAVFYVGLAIFLLVTDRVQRPYLQ---------FSPKRWGLITGLRGYLTSAFLTTGFK--VMAPLFAVYVTWPLLGFPALISVIPFLVGCVAQLAFEMVLEKRQSSCWPLVPIIFEVYRLYQLTKATSFIQNLMFAMNGLPTSPELLEKSGALFAMMVTFRVVSLVCLWSL 326

The following BLAST results are available for this feature:

BLAST of orange1.1g022138m vs. Prunus Persica v1.0
BLAST of orange1.1g022138m vs. Vitis vinifera
BLAST of orange1.1g022138m vs. TAIR10
BLAST of orange1.1g022138m vs. Populus trichicarpa v2.0
BLAST of orange1.1g022138m vs. Malus x domestica v1.0

BLAST of orange1.1g022138m vs. Prunus Persica v1.0
Analysis Date: 2011-02-04 (BLAST: Citrus sinensis gene models CDS vs Prunus persica proteins)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
ppa008427m	1.028e-120	75.19		[more]
ppa007436m	4.164e-13	29.13		[more]

BLAST of orange1.1g022138m vs. Vitis vinifera
Analysis Date: 2011-02-04 (BLAST: Citrus sinensis gene models CDS vs Vitis vinifera proteins)
Total hits: 3

Position :

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Match Name	E-value	Identity	Description
GSVIVT01027684001	1.179e-125	67.47	assembled CDS	[more]
GSVIVT01007705001	1.031e-12	29.89	assembled CDS	[more]
GSVIVT01009618001	8.455e-7	23.36	assembled CDS	[more]

BLAST of orange1.1g022138m vs. TAIR10
Analysis Date: 2011-02-04 (BLAST: Citrus sinensis gene models CDS vs TAIR 10 proteins)
Total hits: 6

Position :

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Match Name	E-value	Identity	Description
AT3G60590.2	2.761e-99	61.85	\| chr3:22398764-22399753 FORWARD LENGTH=330	[more]
AT3G60590.3	2.761e-99	61.85	\| chr3:22398228-22399753 FORWARD LENGTH=405	[more]
AT3G60590.4	5.388e-95	69.96	\| chr3:22399043-22399753 FORWARD LENGTH=237	[more]
AT3G60590.1	5.388e-95	69.96	\| chr3:22399043-22399753 FORWARD LENGTH=237	[more]
AT5G63040.2	4.521e-9	23.13	\| chr5:25288950-25290326 FORWARD LENGTH=367	[more]
AT5G63040.1	4.521e-9	23.13	\| chr5:25288504-25290326 FORWARD LENGTH=367	[more]

BLAST of orange1.1g022138m vs. Populus trichicarpa v2.0
Analysis Date: 2011-02-04 (BLAST: Citrus sinensis gene models CDS vs Populus trichocarpa proteins)
Total hits: 6

Position :

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Match Name	E-value	Identity
POPTR_0176s00200.1	5.495e-128	67.77	[more]
POPTR_0014s05990.2	3.938e-126	66.87	[more]
POPTR_0014s05990.1	3.938e-126	66.87	[more]
POPTR_0176s00220.1	3.436e-21	63.51	[more]
POPTR_0012s09060.2	1.108e-11	27.17	[more]
POPTR_0012s09060.1	1.108e-11	27.17	[more]

BLAST of orange1.1g022138m vs. Malus x domestica v1.0
Analysis Date: 2011-02-04 (BLAST: Citrus sinensis gene models CDS vs Malus x domestica v1.0 proteins)
Total hits: 3

Position :

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Match Name	E-value	Identity	Description
MDP0000942272	7.208e-123	74.73	MDP0000942272	[more]
MDP0000300997	1.772e-12	28.64	MDP0000300997	[more]
MDP0000826832	7.705e-8	21.96	MDP0000826832	[more]

InterPro

Analysis Name: C. sinensis v1.1 peptides
Date Performed: 2018-06-22

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33918	FAMILY NOT NAMED	coord: 31..300
None	No IPR available	PANTHER	PTHR33918:SF3	SUBFAMILY NOT NAMED	coord: 31..300

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold00001:952983..954968+
coding sequence from alignment at scaffold00001:952983..954968+

mRNA sequence

>PAC:18136401 ID=PAC:18136401; Name=orange1.1g022138m; organism=Citrus sinensis; type=mRNA; length=1986bp
CGTTTCATCAGACTTAACTTACAAGCTCATTTGACACCAAGATTTCATAA
GGAGTTTTCTCGACGAGGTAAGCTTTGTGTTTCATTGGATTTTCATTCTT
TATATCAGTTAATCTTTTACGAAATAGCCTCGAATTAATATTTTCTGGCC
CTTTGATTTGACCTCGCTGCTTTTATACTGTCGTTTCTGAAGACAAATCG
AACTTTGAAATGAAAAAATTTCTAGGCTTCTCCTGGAGACCCTGCTGTCA
AAATGCTTTTTAATTTTTtCTAAATTCCGTGTTCTTTAGTATTCTTTTGA
TTTGTGAATTTGTTGTGAAAATTGTTCTTGGGTCGGTAGCCCTTCTCAGC
TTGCAGCCAGGGGATTTTTCATTTTTtCTATAAAGATAATTCAGTTATTA
TTGGCaTGTGACCGAGTGCcATAGTTTGTTTCATTTTTGTCGGGATATTT
TTTTGCCAAAGGAACCAAACTTTAGTACAGCTAATGGGGCAATATTTATC
TTGTAATAGGTTATTTGAGTATATTAACTGTTAGTTTGATATAATCTATA
GTGGAGCTTGTATATGAACTAAATGTCTTTGTGGTTTCTTAGCATGAGGA
ATGCCATTCTTCTTCATTTTTTCTGTTATCTAATGCTTTTTATTTACTTA
TCTCATGAAGTTCATATGCTTTTGTGACTCAAGACTCCAGAGCATAGCTT
TCACTCTGAGCTGCTAACATTTCTGCAAGTAATGGCGTCATTGGCTCAAG
CTCCATCTGCTATGTCGACCGTTGGGGTTCTGTGGACGCTACCCAGAAGC
ATGAGATTGGTAAACTTCAAAAGTGtGATCCCTGTAGTCACCTCACCTTG
TACTCATGTTAAACATTCCCCTCTCTGCTGCACAAAATTGACTCCATGGG
AACcATCACCAGCTTCCCATGCTCCCACTGATGATGCTGACTACAAGATC
TTGAACAAAAATAGCAACATATTTGAAACTTTGAGCTCTGACAATACAGC
TGAAGCTCCAGCAACGAAAACTGAAGAGGTCACGGATGCAAATAATCAGC
CATTGGTCCAGCTTCAGTTTCTCAAATGGCCAATGTGGCTTCTTGGCCCC
TGTATTCTCCTAGGCACAGGTATGGTACCAACTTTGTGGCTACCGATATC
ATCCATATTTCTTGGCCCCAATATTGCCAGCCTGCTTTCCTTGATTGGAC
TAGATTGCATCTTCAATATCGGTGCAACCCTTTTCCTCCTCATGGCAGAT
TCATGCGCtCGGTCTAAAAACACAACACGGGCCTGCAATAGCAAGCCTCC
TTTCAGTTACAAGTTTTGGAATATGGTTGCAAACACAACTGGATTCATCA
TCCCCTTGTTGATGCTGTTTGGCTCACAAAAGGGCTTTCTCCAACCCCAG
CTGCCTTTCATCCCATTTGCAGTTCTTTTAGGTCCCTACCTACTGCTTTT
GTCAATACAGATTTTGACTGAGATGTTAACATGGCATTGGCAGTCACCCG
TGTGGTTGGTGACCCCAGTTGTGTACGAGTCTTACCGCGTGTTGCAACTA
ATGAGAGGGTTGAAGCTAGGGGCTGAGCTCAGTGCACCTGCCTGGATTGT
GCATACAGTTAGGGGCCTAGTTTGCTGGTGGATATTGATCCTTGGTGTGC
AACTCATGAGGGTCGCCTGGTTTGCTGGTTTCACAAGTCAAGCTCGCCGG
CAACAATCTCCTGCTTCTGCTGATGGTTAATCTTGTTTTTCTGCTATCAA
AGAATTACCTGAAACATTGTGGTCTCAATCAAATACAGATTTGTGAGCAA
ACAATAAAGTAAAATGTAGAATTAATATATATTAGCTGATTGAAAACTTG
GTTATTGGTCTCAATCAACTCATCcATACCGTATGTTGTATGGAGGTAGA
AATTTAACGTCATAGAATTTTGGTATTGGAAACTTTTTATTTATTTATTT
ATGCTTGAAAACTTGTATATAAGAATATATATATTT

protein sequence of orange1.1g022138m

>PAC:18136401 ID=PAC:18136401; Name=orange1.1g022138m; organism=Citrus sinensis; type=polypeptide; length=303bp
MASLAQAPSAMSTVGVLWTLPRSMRLVNFKTSHAPTDDADYKILNKNSNI
FETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWLLGPCILLGTG
MVPTLWLPISSIFLGPNIASLLSLIGLDCIFNIGATLFLLMADSCARSKN
TTRACNSKPPFSYKFWNMVANTTGFIIPLLMLFGSQKGFLQPQLPFIPFA
VLLGPYLLLLSIQILTEMLTWHWQSPVWLVTPVVYESYRVLQLMRGLKLG
AELSAPAWIVHTVRGLVCWWILILGVQLMRVAWFAGFTSQARRQQSPASA
DG*

mRNA from alignment at scaffold00001:952983..954968+

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=1986bp; location=Sequence derived from: scaffold00001:952983..954968+ (Citrus sinensis
CGTTTCATCAGACTTAACTTACAAGCTCATTTGACACCAAGATTTCATAA
GGAGTTTTCTCGACGAGGTAAGCTTTGTGTTTCATTGGATTTTCATTCTT
TATATCAGTTAATCTTTTACGAAATAGCCTCGAATTAATATTTTCTGGCC
CTTTGATTTGACCTCGCTGCTTTTATACTGTCGTTTCTGAAGACAAATCG
AACTTTGAAATGAAAAAATTTCTAGGCTTCTCCTGGAGACCCTGCTGTCA
AAATGCTTTTTAATTTTTtCTAAATTCCGTGTTCTTTAGTATTCTTTTGA
TTTGTGAATTTGTTGTGAAAATTGTTCTTGGGTCGGTAGCCCTTCTCAGC
TTGCAGCCAGGGGATTTTTCATTTTTtCTATAAAGATAATTCAGTTATTA
TTGGCaTGTGACCGAGTGCcATAGTTTGTTTCATTTTTGTCGGGATATTT
TTTTGCCAAAGGAACCAAACTTTAGTACAGCTAATGGGGCAATATTTATC
TTGTAATAGGTTATTTGAGTATATTAACTGTTAGTTTGATATAATCTATA
GTGGAGCTTGTATATGAACTAAATGTCTTTGTGGTTTCTTAGCATGAGGA
ATGCCATTCTTCTTCATTTTTTCTGTTATCTAATGCTTTTTATTTACTTA
TCTCATGAAGTTCATATGCTTTTGTGACTCAAGACTCCAGAGCATAGCTT
TCACTCTGAGCTGCTAACATTTCTGCAAGTAATGGCGTCATTGGCTCAAG
CTCCATCTGCTATGTCGACCGTTGGGGTTCTGTGGACGCTACCCAGAAGC
ATGAGATTGGTAAACTTCAAAAGTGtGATCCCTGTAGTCACCTCACCTTG
TACTCATGTTAAACATTCCCCTCTCTGCTGCACAAAATTGACTCCATGGG
AACcATCACCAGCTTCCCATGCTCCCACTGATGATGCTGACTACAAGATC
TTGAACAAAAATAGCAACATATTTGAAACTTTGAGCTCTGACAATACAGC
TGAAGCTCCAGCAACGAAAACTGAAGAGGTCACGGATGCAAATAATCAGC
CATTGGTCCAGCTTCAGTTTCTCAAATGGCCAATGTGGCTTCTTGGCCCC
TGTATTCTCCTAGGCACAGGTATGGTACCAACTTTGTGGCTACCGATATC
ATCCATATTTCTTGGCCCCAATATTGCCAGCCTGCTTTCCTTGATTGGAC
TAGATTGCATCTTCAATATCGGTGCAACCCTTTTCCTCCTCATGGCAGAT
TCATGCGCtCGGTCTAAAAACACAACACGGGCCTGCAATAGCAAGCCTCC
TTTCAGTTACAAGTTTTGGAATATGGTTGCAAACACAACTGGATTCATCA
TCCCCTTGTTGATGCTGTTTGGCTCACAAAAGGGCTTTCTCCAACCCCAG
CTGCCTTTCATCCCATTTGCAGTTCTTTTAGGTCCCTACCTACTGCTTTT
GTCAATACAGATTTTGACTGAGATGTTAACATGGCATTGGCAGTCACCCG
TGTGGTTGGTGACCCCAGTTGTGTACGAGTCTTACCGCGTGTTGCAACTA
ATGAGAGGGTTGAAGCTAGGGGCTGAGCTCAGTGCACCTGCCTGGATTGT
GCATACAGTTAGGGGCCTAGTTTGCTGGTGGATATTGATCCTTGGTGTGC
AACTCATGAGGGTCGCCTGGTTTGCTGGTTTCACAAGTCAAGCTCGCCGG
CAACAATCTCCTGCTTCTGCTGATGGTTAATCTTGTTTTTCTGCTATCAA
AGAATTACCTGAAACATTGTGGTCTCAATCAAATACAGATTTGTGAGCAA
ACAATAAAGTAAAATGTAGAATTAATATATATTAGCTGATTGAAAACTTG
GTTATTGGTCTCAATCAACTCATCcATACCGTATGTTGTATGGAGGTAGA
AATTTAACGTCATAGAATTTTGGTATTGGAAACTTTTTATTTATTTATTT
ATGCTTGAAAACTTGTATATAAGAATATATATATTT

Coding sequence (CDS) from alignment at scaffold00001:952983..954968+

>PAC:18136401 ID=PAC:18136401; Name=orange1.1g022138m; organism=Citrus sinensis; type=CDS; length=907bp; location=Sequence derived from: scaffold00001:952983..954968+ (Citrus sinensis
TGGCGTCATTGGCTCAAGCTCCATCTGCTATGTCGACCGTTGGGGTTCTG
TGGACGCTACCCAGAAGCATGAGATTGGTAAACTTCAAAATTCCCATGCT
CCCACTGATGATGCTGACTACAAGATCTTGAACAAAAATAGCAACATATT
TGAAACTTTGAGCTCTGACAATACAGCTGAAGCTCCAGCAACGAAAACTG
AAGAGGTCACGGATGCAAATAATCAGCCATTGGTCCAGCTTCAGTTTCTC
AAATGGCCAATGTGGCTTCTTGGCCCCTGTATTCTCCTAGGCACAGGTAT
GGTACCAACTTTGTGGCTACCGATATCATCCATATTTCTTGGCCCCAATA
TTGCCAGCCTGCTTTCCTTGATTGGACTAGATTGCATCTTCAATATCGGT
GCAACCCTTTTCCTCCTCATGGCAGATTCATGCGCtCGGTCTAAAAACAC
AACACGGGCCTGCAATAGCAAGCCTCCTTTCAGTTACAAGTTTTGGAATA
TGGTTGCAAACACAACTGGATTCATCATCCCCTTGTTGATGCTGTTTGGC
TCACAAAAGGGCTTTCTCCAACCCCAGCTGCCTTTCATCCCATTTGCAGT
TCTTTTAGGTCCCTACCTACTGCTTTTGTCAATACAGATTTTGACTGAGA
TGTTAACATGGCATTGGCAGTCACCCGTGTGGTTGGTGACCCCAGTTGTG
TACGAGTCTTACCGCGTGTTGCAACTAATGAGAGGGTTGAAGCTAGGGGC
TGAGCTCAGTGCACCTGCCTGGATTGTGCATACAGTTAGGGGCCTAGTTT
GCTGGTGGATATTGATCCTTGGTGTGCAACTCATGAGGGTCGCCTGGTTT
GCTGGTTTCACAAGTCAAGCTCGCCGGCAACAATCTCCTGCTTCTGCTGA
TGGTTAA