Cic285280.3
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Cic285280.3 vs. ExPASy TrEMBL
Match: A0A067GEU7|A0A067GEU7_CITSI (C2H2-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g027549mg PE=4 SV=1) HSP 1 Score: 290.426 bits (742), Expect = 7.038e-97 Identity = 141/144 (97.92%), Postives = 141/144 (97.92%), Query Frame = 0 Query: 25 MANLPSAADGENLEKGTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASIGFASTIVDPLFSNQPGNSCEVVGNNLAFHKRSSSNLTFSMNATFAGSGSTPSAGFPLDVSLSLGLNGVQKLRNDEIQTCQDG 168
MANLPSAADGENLEKGTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASIG ASTIVDPL SNQPGNSCEVVGNNLAFHKRSS NLTFSMNATFAGSGSTPSAGFPLDVSLSLGLNGVQKLRNDEIQTCQDG
Sbjct: 1 MANLPSAADGENLEKGTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASIGSASTIVDPLSSNQPGNSCEVVGNNLAFHKRSSPNLTFSMNATFAGSGSTPSAGFPLDVSLSLGLNGVQKLRNDEIQTCQDG 144
BLAST of Cic285280.3 vs. ExPASy TrEMBL
Match: A0A2H5N4K4|A0A2H5N4K4_CITUN (C2H2-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_014670 PE=4 SV=1) HSP 1 Score: 285.034 bits (728), Expect = 3.125e-95 Identity = 139/144 (96.53%), Postives = 139/144 (96.53%), Query Frame = 0 Query: 25 MANLPSAADGENLEKGTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASIGFASTIVDPLFSNQPGNSCEVVGNNLAFHKRSSSNLTFSMNATFAGSGSTPSAGFPLDVSLSLGLNGVQKLRNDEIQTCQDG 168
MANLPS ADGENLE GTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASIG ASTIVDPL SNQPGNSCEVVGNNLAFHKRSSSNLTFSMNATFAG GSTPSAGFPLDVSLSLGLNGVQKLRNDEIQTCQDG
Sbjct: 1 MANLPSTADGENLENGTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASIGSASTIVDPLSSNQPGNSCEVVGNNLAFHKRSSSNLTFSMNATFAGFGSTPSAGFPLDVSLSLGLNGVQKLRNDEIQTCQDG 144
BLAST of Cic285280.3 vs. ExPASy TrEMBL
Match: A0A5N6QCV8|A0A5N6QCV8_9ROSI (C2H2-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_000935 PE=4 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.842e-12 Identity = 57/188 (30.32%), Postives = 82/188 (43.62%), Query Frame = 0 Query: 31 AADGENLEKGTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASIGFASTIVDPLFSNQPGNSCEVVGNNLA-FHKRSSSNLTFSM--------------------NAT----------------------------FAGSGSTPSAGFPLDVSLSLGLNGVQKLRNDEIQTCQDGK 169
A++ EN EKG SC YC+K F NH +L GHLR+H ++ A N P +S + +ST +P+ QP NS NN + R++S++ FS NAT F S S+ + GFP+D SL G G+ + DE++T +DGK
Sbjct: 6 ASNKENAEKGMEIHSCFYCKKVFNNHLALGGHLRAHQEEINARRSWNYPVHSSNFLDVSSTAPNPILMGQPENSSGGARNNPSVLFSRATSSMDFSKFCLNESSCVNARKYFENNVGNATSQFFMSPNLSSSSGCAEVHHSNPLTSSLFLPSASSATTGFPMDSSLYSGPYGICQFNTDELRTFRDGK 193
BLAST of Cic285280.3 vs. ExPASy TrEMBL
Match: A0A8J4QND3|A0A8J4QND3_9ROSI (C2H2-type domain-containing protein OS=Castanea mollissima OX=60419 GN=CMV_024291 PE=4 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 6.304e-7 Identity = 55/193 (28.50%), Postives = 78/193 (40.41%), Query Frame = 0 Query: 28 LPSAADGENLEKGTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASIGFASTIVDPLFSNQPGNSC-----------EVVGNNLAF----------------------HKRS----SSNLTF------------SMNATFAGSGSTPSAGFPLDVSLSLGLNGVQKLRNDEIQTCQDGKSF 171
LPS D EN EK SC YC+ F NH++L HLR H ++ A N P +S I S+ ++P+ +QP +S V +NL F + RS S NL++ S + F S S + GFP+ S NG + DE++T +DG F
Sbjct: 5 LPS--DKENAEKHVGLLSCFYCKMVFNNHQALGAHLRVHQEEINAWKSWNYPVHSSTFIDGTSSALNPISMSQPDHSSGGAWSNPSTLFSGVTSNLDFSNFCSNESSWVNASNYSQNNVGYARSQYIMSPNLSYGSASARFHPSAPSSSTVFISSASPATTGFPMGPSSYFNSNGACQFNTDELRTFRDGMPF 195
BLAST of Cic285280.3 vs. ExPASy TrEMBL
Match: A0A6A6LWR5|A0A6A6LWR5_HEVBR (C2H2-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_005260 PE=4 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 8.753e-7 Identity = 60/208 (28.85%), Postives = 77/208 (37.02%), Query Frame = 0 Query: 30 SAADGENLEKGTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASIGFASTIVDPLFSNQP----------------------------------GNSCEVVGNNLA---FHKRSSSNLT-------------FSMNATFAGSGSTPSA---------GFPLDVSLSLGLNGVQKLRNDEIQTCQDGKSFFYGGVLQ 178
S EN +K SC YC+K F+NH++L GHLR H ++K+ R N S SI T V+PL + QP N+ + GNNLA H S NL+ F M A TPS+ GFP D S G + V DE +T +D F LQ
Sbjct: 5 SVTGKENAKKHVDIHSCFYCKKVFSNHQALGGHLRVHQGEIKSRKRWNSSGVSSNSIDITGTHVNPLTNLQPETSSGEARKILPFFNWEASPFGFYKRCYLHENSLANTSKFFGNNLANGESHLIMSPNLSSTSGSAEIHQPSCFIMTAITPFRNGTPSSNTFASPVAIGFPSDPSFCSGNSEVCHFNFDECRTWRDAIPFISENALQ 212 The following BLAST results are available for this feature:
BLAST of Cic285280.3 vs. ExPASy TrEMBL
Analysis Date: 2024-01-31 (Blastp of Citrus ichangensis cv. ZGYCC v2.0 proteins vs UniProt TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Cic285280.3 vs. ExPASy TrEMBL
Analysis Date: 2024-01-31 (Blastp of Citrus ichangensis cv. ZGYCC v2.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Cic285280.3 vs. ExPASy TrEMBL
Analysis Date: 2024-01-31 (Blastp of Citrus ichangensis cv. ZGYCC v2.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus ichangensis cv. ZGYCC v2.0 proteins
Date Performed: 2024-01-31 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cic285280.3-ZGYCC_v2 ID=Cic285280.3-ZGYCC_v2; Name=Cic285280.3; organism=Citrus ichangensis; type=mRNA; length=603bpback to top protein sequence of Cic285280.3-ZGYCC_v2 >Cic285280.3-ZGYCC_v2 ID=Cic285280.3-ZGYCC_v2; Name=Cic285280.3-ZGYCC_v2; organism=Citrus ichangensis; type=polypeptide; length=201bpback to top mRNA from alignment at contig452:1160910..1164327+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=3418bp; location=Sequence derived from: contig452:1160910..1164327+ (Citrus ichangensisback to top Coding sequence (CDS) from alignment at contig452:1160910..1164327+ >Cic285280.3-ZGYCC_v2 ID=Cic285280.3-ZGYCC_v2; Name=Cic285280.3; organism=Citrus ichangensis; type=CDS; length=603bp; location=Sequence derived from: contig452:1160910..1164327+ (Citrus ichangensisback to top |