Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cic285280.3.utr5.1 Cic285280.3.utr5.1-ZGYCC_v2 Citrus ichangensis five_prime_UTR
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cic285280.3.utr3.1 Cic285280.3.utr3.1-ZGYCC_v2 Citrus ichangensis three_prime_UTR
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Cic285280.3-ZGYCC_v2 Cic285280.3-ZGYCC_v2 Citrus ichangensis polypeptide Cic285280.3-ZGYCC_v2 Cic285280.3-ZGYCC_v2-protein Citrus ichangensis polypeptide
Homology
BLAST of Cic285280.3 vs. ExPASy TrEMBL
Match:
A0A067GEU7|A0A067GEU7_CITSI (C2H2-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g027549mg PE=4 SV=1)
HSP 1 Score: 290.426 bits (742), Expect = 7.038e-97
Identity = 141/144 (97.92%), Postives = 141/144 (97.92%), Query Frame = 0
Query: 25 MANLPSAADGENLEKGTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASIGFASTIVDPLFSNQPGNSCEVVGNNLAFHKRSSSNLTFSMNATFAGSGSTPSAGFPLDVSLSLGLNGVQKLRNDEIQTCQDG 168
MANLPSAADGENLEKGTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASIG ASTIVDPL SNQPGNSCEVVGNNLAFHKRSS NLTFSMNATFAGSGSTPSAGFPLDVSLSLGLNGVQKLRNDEIQTCQDG
Sbjct: 1 MANLPSAADGENLEKGTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASIGSASTIVDPLSSNQPGNSCEVVGNNLAFHKRSSPNLTFSMNATFAGSGSTPSAGFPLDVSLSLGLNGVQKLRNDEIQTCQDG 144
BLAST of Cic285280.3 vs. ExPASy TrEMBL
Match:
A0A2H5N4K4|A0A2H5N4K4_CITUN (C2H2-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_014670 PE=4 SV=1)
HSP 1 Score: 285.034 bits (728), Expect = 3.125e-95
Identity = 139/144 (96.53%), Postives = 139/144 (96.53%), Query Frame = 0
Query: 25 MANLPSAADGENLEKGTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASIGFASTIVDPLFSNQPGNSCEVVGNNLAFHKRSSSNLTFSMNATFAGSGSTPSAGFPLDVSLSLGLNGVQKLRNDEIQTCQDG 168
MANLPS ADGENLE GTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASIG ASTIVDPL SNQPGNSCEVVGNNLAFHKRSSSNLTFSMNATFAG GSTPSAGFPLDVSLSLGLNGVQKLRNDEIQTCQDG
Sbjct: 1 MANLPSTADGENLENGTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASIGSASTIVDPLSSNQPGNSCEVVGNNLAFHKRSSSNLTFSMNATFAGFGSTPSAGFPLDVSLSLGLNGVQKLRNDEIQTCQDG 144
BLAST of Cic285280.3 vs. ExPASy TrEMBL
Match:
A0A5N6QCV8|A0A5N6QCV8_9ROSI (C2H2-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_000935 PE=4 SV=1)
HSP 1 Score: 75.0998 bits (183), Expect = 2.842e-12
Identity = 57/188 (30.32%), Postives = 82/188 (43.62%), Query Frame = 0
Query: 31 AADGENLEKGTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASIGFASTIVDPLFSNQPGNSCEVVGNNLA-FHKRSSSNLTFSM--------------------NAT----------------------------FAGSGSTPSAGFPLDVSLSLGLNGVQKLRNDEIQTCQDGK 169
A++ EN EKG SC YC+K F NH +L GHLR+H ++ A N P +S + +ST +P+ QP NS NN + R++S++ FS NAT F S S+ + GFP+D SL G G+ + DE++T +DGK
Sbjct: 6 ASNKENAEKGMEIHSCFYCKKVFNNHLALGGHLRAHQEEINARRSWNYPVHSSNFLDVSSTAPNPILMGQPENSSGGARNNPSVLFSRATSSMDFSKFCLNESSCVNARKYFENNVGNATSQFFMSPNLSSSSGCAEVHHSNPLTSSLFLPSASSATTGFPMDSSLYSGPYGICQFNTDELRTFRDGK 193
BLAST of Cic285280.3 vs. ExPASy TrEMBL
Match:
A0A8J4QND3|A0A8J4QND3_9ROSI (C2H2-type domain-containing protein OS=Castanea mollissima OX=60419 GN=CMV_024291 PE=4 SV=1)
HSP 1 Score: 59.3066 bits (142), Expect = 6.304e-7
Identity = 55/193 (28.50%), Postives = 78/193 (40.41%), Query Frame = 0
Query: 28 LPSAADGENLEKGTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASIGFASTIVDPLFSNQPGNSC-----------EVVGNNLAF----------------------HKRS----SSNLTF------------SMNATFAGSGSTPSAGFPLDVSLSLGLNGVQKLRNDEIQTCQDGKSF 171
LPS D EN EK SC YC+ F NH++L HLR H ++ A N P +S I S+ ++P+ +QP +S V +NL F + RS S NL++ S + F S S + GFP+ S NG + DE++T +DG F
Sbjct: 5 LPS--DKENAEKHVGLLSCFYCKMVFNNHQALGAHLRVHQEEINAWKSWNYPVHSSTFIDGTSSALNPISMSQPDHSSGGAWSNPSTLFSGVTSNLDFSNFCSNESSWVNASNYSQNNVGYARSQYIMSPNLSYGSASARFHPSAPSSSTVFISSASPATTGFPMGPSSYFNSNGACQFNTDELRTFRDGMPF 195
BLAST of Cic285280.3 vs. ExPASy TrEMBL
Match:
A0A6A6LWR5|A0A6A6LWR5_HEVBR (C2H2-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_005260 PE=4 SV=1)
HSP 1 Score: 59.3066 bits (142), Expect = 8.753e-7
Identity = 60/208 (28.85%), Postives = 77/208 (37.02%), Query Frame = 0
Query: 30 SAADGENLEKGTSAFSCIYCRKSFANHRSLRGHLRSHNVQLKAAWRRNCPSNSCASIGFASTIVDPLFSNQP----------------------------------GNSCEVVGNNLA---FHKRSSSNLT-------------FSMNATFAGSGSTPSA---------GFPLDVSLSLGLNGVQKLRNDEIQTCQDGKSFFYGGVLQ 178
S EN +K SC YC+K F+NH++L GHLR H ++K+ R N S SI T V+PL + QP N+ + GNNLA H S NL+ F M A TPS+ GFP D S G + V DE +T +D F LQ
Sbjct: 5 SVTGKENAKKHVDIHSCFYCKKVFSNHQALGGHLRVHQGEIKSRKRWNSSGVSSNSIDITGTHVNPLTNLQPETSSGEARKILPFFNWEASPFGFYKRCYLHENSLANTSKFFGNNLANGESHLIMSPNLSSTSGSAEIHQPSCFIMTAITPFRNGTPSSNTFASPVAIGFPSDPSFCSGNSEVCHFNFDECRTWRDAIPFISENALQ 212
The following BLAST results are available for this feature:
BLAST of Cic285280.3 vs. ExPASy TrEMBL
Analysis Date: 2024-01-31 (
Blastp of Citrus ichangensis cv. ZGYCC v2.0 proteins vs UniProt TrEMBL )
Total hits: 5
50 100 150 200 250 300 350 400 450 500 550 600 Expect = 7.04e-97 / Id = 97.92 Expect = 3.13e-95 / Id = 96.53 Expect = 2.84e-12 / Id = 30.32 Expect = 6.30e-7 / Id = 28.50 Expect = 8.75e-7 / Id = 28.85 Sequence A0A067GEU7|A0A067GEU7_CITSI A0A2H5N4K4|A0A2H5N4K4_CITUN A0A5N6QCV8|A0A5N6QCV8_9ROSI A0A8J4QND3|A0A8J4QND3_9ROSI A0A6A6LWR5|A0A6A6LWR5_HEVBR back to top
Sequences
The
following sequences are available for this feature:
mRNA sequence
>Cic285280.3-ZGYCC_v2 ID=Cic285280.3-ZGYCC_v2; Name=Cic285280.3; organism=Citrus ichangensis; type=mRNA; length=603bp back to top protein sequence of Cic285280.3-ZGYCC_v2
>Cic285280.3-ZGYCC_v2 ID=Cic285280.3-ZGYCC_v2; Name=Cic285280.3-ZGYCC_v2; organism=Citrus ichangensis; type=polypeptide; length=201bp back to top mRNA from alignment at contig452:1160910..1164327+
Legend: five_prime_UTR exon CDS polypeptide three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=3418bp; location=Sequence derived from: contig452:1160910..1164327+ (Citrus ichangensisCAAAGTTGAAATAAAAGCAAAAGAAGCTAGTATGAAAATAATAGCCTTAC
CAAATTTTAAATATCTTGTTATATTTGTCAACAATTTGACAGGTGCGTGC
CAAAATTTTTAAATGAAAGATGTAGCTGAAAAATGAAAATAAATAAGACA
ACCGAGCAAAAAGAAGCGGGGAATCACATGACTTAGGAGCTGCCGCCGGT
GACTCTCAGTCGGAGCACGACGAGGACACTTATAGAGGCAATTCTCTCTC
TCACTCTCTCTCTATGTCCATATAATTCTGACATTTTATAACTGCAAATT
TATTATTATGTTGCTTTGAGATAGATCATGTAGTAACAGAAGTATACTTG
TGTTTTCTATTATGGATTAAGTACAGTGCCGTCTAGTTTCGTTTGTGTCG
TATATTTGAACTGATGTCCATTTTTTCCGTAACTTATAATTTCTTAATGC
GTGCAATCGACAGGCAATTAGTGAAACTATTATGATTTTGTTAGTGGCGG
TGAAATTAGTCGATTATCTTTTTAGTGATATTCGTTGCTTCATCTTTCTG
TACTTTGCTTACCATGTCTTCATTATAGATGAAATCAAGCAGCTTCGTCT
TATTTTGAGTTGACTTTGCTTGAAACTTGTAATTAATTGTTAAGGAAAAT
GTGACCAATCATCATTGTTGGTTTATGCCTGAACTATGAATGGAATGGAA
ACGAGAATATTGAAATTGGGAAACTTTTAAGTGAATATTGGCATTTTTGT
TTCCCTGATTTGTTGGGCACAGCCCTAATATCAGCCGTTTTGATTGAGAC
TCTAAATGAGTTACATCTTAATTGATAAAGGTAAAGATAGAACTATATCT
TATTGTTATCAGCTATGGTTTTGCTCTTTGGTTATGTTCCCCTTTTAGCA
TTGAAGTTGTTGTGGTCTAACCATATTTTTCACGTCCATTTTGAAATCGT
AGATTTTTAATAGATTAGGAAAAGAAAGAAAGAAAGAAATGCATGCAAAA
ATTACACTAGTTACGGACAAAAAGGTTTTCGTAAATAATGTTCTTTTTTC
TTTAAATCATAGGTTACTTAACTAGATTGTACTAATTTTGATTCATATAT
TTCTGAGTCAGTATATACATTATCCTGTTCACTTAATTTGTTTATACATC
TTTCTGTGGACCCATTGAAAACTAAGACCATTGCATGGTCAGCTCCTTTA
GTTTATACAACTGCCTAAATTTTCTCGGTTGAACTCTGTCATATCATATT
GTTAGGCATAGTATTTTAATTTTGTCAGCCTACAATCGTGTAAAACTGTG
TATTATATTGGTGACTGGCTGGTTAATATATTAACCCTCCAACTCTCCTA
ATAACGCCACCCGATCAATTTATGGCGATTATGGCTTTGGATAGGGTGCG
CCTGTGGAAAATGATTCGTGTAAACATCTCACAATAGTTTGAGATTACGC
TTTAGTTTAGTTGAATTAGATTAAGTGTGCTAGATTGTTTTGTCTATTAG
AAAGTGATGTCAGGGTAATTATTATGCACTCTCTCATGATTTGGCCGTAT
TTTGGTTGGGGTGCATTATTTATTGAAATTTAGATCTCTGTAGCATTATT
ATTTGATTGTGAAGTGCTGTCCGAAATTTCAAGTCTTTTTCGATACGAAA
TTATAGTTACGCAATTGGCATTGACATTTTTGCCTTTGTTTTGCTTTTGG
CTGCCTGTGGAAAAAATACATGACCGATATTTAGGCAATGTGAGGATCAA
TGATTGTCAGATTTCAAACCTTGTTGAAGAAGCAGATGAGAAAATAAGCA
ACATGCCTTTGTTGTTCTTTCAACCATGCATGCTCATTGCTAAAAATTTT
TTGGGGTTACTACTGTATCCTCCTAGGAGTGCAAACAATTGAGGTCTCAA
CTTTGTTTGGAATTTTCCTATGTCTAATTGTTATGATCGTCATAATAGAG
ATTTCACGACCTACTTCCTTGTGATGTATTCTTTGAATTTCCAAAATTTC
CCAATGATGGATGCCAAAGATTAAGTGACATGTTATTTCGTGGCGTTGTG
ATAGCTAATCATCTTCTTTTACATAGCTCTGACATTTGTTTTTAGAGGTG
CTGGTGCTTTAAGGATAAGGCCAGGTTTAGCTGCCATTGCATATAATTCA
ATGCTAACAATGTCTTTCCATATTTAGTATATGTCTTTCCTCTTCTTAAA
TGATTTTAATTAGGATTGTCATTTTACATTAATTAGTCTAACCGATAAGA
CCTATTTCTCTCTCCTAAAATGTAAAACGGGGAAAAAAGTTGGCATTCTT
CGTCACCGC ATGGTTTCCCTTGCATTTCCTCTTTCTCTTCTCTTCTTGTT
GACCCTATTTTGGGTCTTGTTTACAACTTCAATGGCGAACCTCCCTTCAG
CTGCTGACGGAGAAAACCTAGAAAAGGGCACTAGTGCTTTTTCTTGCATC
TATTGCAGAAAATCATTTGCTAACCATCGCTCTCTTAGAGGTCATCTTAG
GTCTCATAATGTCCAGTTGAAGGCAGCTTGGAGGAGGAATTGCCCTAGTA
ATTCTTGTGCTTCCATTGGCTTTGCTAGCACCATCGTTGATCCCCTGTTC
AGCAACCAACCTGGCAATTCTTGTGAAGTTGTTGGGAACAATCTAGCTTT
CCATAAGAGGTCCAGCTCAAATTTAACTTTCTCGATGAATGCAA CTTTTGCTGGATCTGGTAGCACTCCGTCCGCTGGTTTCCCTTTGG
ATGTTTCATTGTCTTTAGGCTTGAATGGAGTCCAGAAATTGCGTAATGAT
GAGATCCAAACTTGCCAAGATGGTAAGTCGTTCTTCTATGGAGGTGTCTT
GCAGAAGTCTCAACCCAACCTTA ATGGTAGGTTTCTTGAATTTTGGACAGG
GCGAGAGGATTTACCCAATTGA TTCCCTTGCAAACACTGATGTGATGAAA
AGATCAAAAAGGGCAAAGATTGTCTCCAGATTGCCTGTGGAAATACAGAA
GCCTCAAATCAAGGAATCATCTCTTGTTAAGACTATGGAGAAACCAGGTC
CTGCATTGCTGATTTCCGTGGATGCTGAACAGGAGGTCCCAGCAGATTTA
GATCTATCTCTACATCTGTAGATTTGTACCATTTTTTTGCAAATAAATTG
ACAATATAATTAGTGGTA back to top Coding sequence (CDS) from alignment at contig452:1160910..1164327+
>Cic285280.3-ZGYCC_v2 ID=Cic285280.3-ZGYCC_v2; Name=Cic285280.3; organism=Citrus ichangensis; type=CDS; length=603bp; location=Sequence derived from: contig452:1160910..1164327+ (Citrus ichangensis back to top
