Citrus-C.sinensis-consensus-2018

Map Overview

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NameCitrus-C.sinensis-consensus-2018
SpeciesCitrus sinensis
Analysis methodKosambi
Map typegenetic
Population size170
Map unitcM
Population size170
Number of loci754
Number of QTL4
Number of linkage groups9
Publication[view all]
ContactFrederick Gmitter
Publication
YearPublications
2018Huang M, Roose ML, Yu Q, Du D, Yu Y, Zhang Y, Deng Z, Stover E, Gmitter FG. Construction of High-Density Genetic Maps and Detection of QTLs Associated With Huanglongbing Tolerance in Citrus.. Frontiers in plant science. 2018; 9:1694.
Map QTL
This map contains 4 QTL:
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Linkage GroupNameTypeStartStopPeak
Citrus-C.sinensis-consensus-2018.LG07qHLBFS.C.sinensis-consensus.LG7.2016QTL--43.9 cM
Citrus-C.sinensis-consensus-2018.LG07qHLBFS.C.sinensis-consensus.LG7.2015QTL--56.3 cM
Citrus-C.sinensis-consensus-2018.LG07qHLBFS.C.sinensis-consensus.LG7.2015.2QTL--67.1 cM
Citrus-C.sinensis-consensus-2018.LG07qHLBFS.C.sinensis-consensus.LG7.2016.2QTL--73.5 cM
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Contact
NameDetails
Frederick Gmitter
First name:Frederick
Last name:Gmitter
Title:Researcher
Institution:University of Florida
Address:Citrus Research and Education Center, University of Florida, Lake Alfred, FL 33850, USA
Country:USA
Email:fgmitter@ufl.edu
Last update:Nov 2018
Map Loci
This map contains 754 marker loci:
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Linkage GroupMarker NameLocus NameTypePosition
Citrus-C.sinensis-consensus-2018.LG044_22894654_2289465marker_locus8.83 cM
Citrus-C.sinensis-consensus-2018.LG044_24541144_2454114marker_locus9.07 cM
Citrus-C.sinensis-consensus-2018.LG044_29136544_2913654marker_locus10.1 cM
Citrus-C.sinensis-consensus-2018.LG044_26467244_2646724marker_locus10.46 cM
Citrus-C.sinensis-consensus-2018.LG044_39017474_3901747marker_locus11.25 cM
Citrus-C.sinensis-consensus-2018.LG044_33974384_3397438marker_locus11.46 cM
Citrus-C.sinensis-consensus-2018.LG044_37414054_3741405marker_locus11.57 cM
Citrus-C.sinensis-consensus-2018.LG044_30235134_3023513marker_locus11.8 cM
Citrus-C.sinensis-consensus-2018.LG044_34758414_3475841marker_locus12.35 cM
Citrus-C.sinensis-consensus-2018.LG044_68959794_6895979marker_locus14.46 cM
Citrus-C.sinensis-consensus-2018.LG044_62927884_6292788marker_locus15.45 cM
Citrus-C.sinensis-consensus-2018.LG044_64909154_6490915marker_locus15.49 cM
Citrus-C.sinensis-consensus-2018.LG044_70369104_7036910marker_locus15.69 cM
Citrus-C.sinensis-consensus-2018.LG042_30361742_3036174marker_locus16.58 cM
Citrus-C.sinensis-consensus-2018.LG044_92969304_9296930marker_locus16.87 cM
Citrus-C.sinensis-consensus-2018.LG044_73980334_7398033marker_locus17.07 cM
Citrus-C.sinensis-consensus-2018.LG044_91875424_9187542marker_locus17.24 cM
Citrus-C.sinensis-consensus-2018.LG044_95054064_9505406marker_locus17.33 cM
Citrus-C.sinensis-consensus-2018.LG044_79646834_7964683marker_locus17.39 cM
Citrus-C.sinensis-consensus-2018.LG042_35420002_3542000marker_locus17.98 cM
Citrus-C.sinensis-consensus-2018.LG042_8748782_874878marker_locus18.36 cM
Citrus-C.sinensis-consensus-2018.LG044_106536984_10653698marker_locus18.64 cM
Citrus-C.sinensis-consensus-2018.LG044_108867434_10886743marker_locus18.85 cM
Citrus-C.sinensis-consensus-2018.LG042_36315392_3631539marker_locus18.93 cM
Citrus-C.sinensis-consensus-2018.LG042_8257952_825795marker_locus19.04 cM
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Stock
NameTypeDetails
C. sinensis_x_P. trifoliata-F1population
Comments:mapping population
Population size:170
Pedigree:Sanford x Argentina;Succari x Flying Dragon;Flying Dragon x Succari
Description:data used for linkage map constuction based on SNP segregation between multiple intergeneric crosses (see pedigree)
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