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Overview
| Genus | Citrus |
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| Species | sinensis |
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| Common Name | Sweet orange |
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| Abbreviation | C. sinensis |
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| Also known as | Citrus aurantium var. sinensis |
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| Ploidy | Diploid |
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| Chromosome Number | 2n=2x=18 |
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| Genome Size | 380 Mb |
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| Available Markers | 2,191 |
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| Available Maps | 2 |
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| Available QTLs | 673 (Citrus spp.) |
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| Available MTLs | 0 |
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| Available Traits | 153 (Citrus spp.) |
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| Available Genomes | 4 |
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Unigenes
Below is a list of unigenes available for Citrus sinensis. Click the unigene name for further details.
Germplasm
Page of 21
Libraries
The following libraries are associated with this organism.
| Library Name | Type |
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| Mature peel (flavedo) cDNA subtraction library | cDNA |
| PhyRootSw1 | cDNA |
| Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) | cDNA |
| Parent Washington Navel Orange Red Scale-Infested Rind cDNA Library UCRCS11-2 | cDNA |
| AbsCFruit | cDNA |
| Citrus apomitic embryos (subtractive cDNA library) | cDNA |
| Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library | cDNA |
| Mature fruit abscission zone cDNA subtraction library | cDNA |
| Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 | cDNA |
| Ridge pineapple sweet orange entire seedling | cDNA |
| Sweet orange leaf, greenhouse plant | cDNA |
| Sweet orange leaf, young greenhouse plant | cDNA |
| Sweet orange leaf, infected with CiLV | cDNA |
| Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 | cDNA |
| Ruby Orange Ovary at Anthesis cDNA Library | cDNA |
| RindPdigS | cDNA |
| Developing fruit juice sac at 38 DAFB | cDNA |
| Hong Anliu sweet orange SSH library | cDNA |
| Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange | cDNA |
| Mature leaf blade cDNA subtraction library | cDNA |
| Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 | cDNA |
| Ruby Orange Developing Flower cDNA Library | cDNA |
| Cara cara navel orange fruit cDNA library | cDNA |
| Sweet orange fruit, development stadium (3 of 6) | cDNA |
| Ruby Orange Developing Seed cDNA Library UCRCS09-2 | cDNA |
| Mature Juice Sac from Navel Orange in Vulnus5 vector | cDNA |
| Citrus zygotic embryos (subtractive cDNA library) | cDNA |
| Developing fruit flavedo at 80 DAFB | cDNA |
| Washington Navel Orange Shoot Meristem cDNA Library | cDNA |
| Developing fruit peel at 38 DAFB | cDNA |
| EIC | cDNA |
| Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-2 | cDNA |
| Sweet orange fruit, development stadium (2 of 6) | cDNA |
| Sweet orange leaf, field plant B | cDNA |
| Mature Juice Sac from Navel Orange in pTriplEx2 vector | cDNA |
| VSS | cDNA |
| Developing fruit flavedo at 165 DAFB | cDNA |
| Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar | cDNA |
| Ruby Orange Developing Flower cDNA Library UCRCS04-UCR | cDNA |
| BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library | cDNA |
| Citrus sinensis phloem | cDNA |
| Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 | cDNA |
| Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 | cDNA |
| Sweet orange fruit, development stadium (4 of 6) | cDNA |
| Mature Albedo | cDNA |
| Valencia orange young seeds cDNA | cDNA |
| Sweet orange fruit, development stadium (1 of 6) | cDNA |
| Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) | cDNA |
| Developing fruit albedo at 80 DAFB in pTriplEx2 vector | cDNA |
| Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 | cDNA |
| Sweet orange bark, greenhouse plant | cDNA |
| Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10-2 | cDNA |
| Washington Navel Orange Stored Fruit Pulp cDNA Library | cDNA |
| Flavedo Mature | cDNA |
| Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 | cDNA |
| sweet orange flesh cDNA | cDNA |
| Washington Navel orange cold acclimated flavedo & albedo cDNA library | cDNA |
| Washington navel orange leaf axil bud | cDNA |
| AbsCFruit1 | cDNA |
| Sweet orange leaf, field plant A | cDNA |
| Developing fruit albedo at 80 DAFB in Vulnus5 vector | cDNA |
| Washington Navel Orange Stored Fruit Rind cDNA Library | cDNA |
| Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar | cDNA |
| Different expression profile of FJWC and FJ72-1 | cDNA |
| Sweet orange fruit, development stadium (5 of 6) | cDNA |
| Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 | cDNA |
| Sweet orange flower, greenhouse plant | cDNA |
| Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) | cDNA |
| Developing fruit albedo at 165 DAFB | cDNA |
| Citrus sinensis flesh cDNA-AFLP Library | cDNA |
| SLH | cDNA |
| Sweet orange fruit, development stadium (6 of 6) | cDNA |
| Developing fruit 24 DAFB | cDNA |
| Ruby Orange Developing Flower cDNA Library UCRCS04-2 | cDNA |
| Citrus sinensis flavedo cells | cDNA |
| Ruby Orange Developing Seed cDNA Library UCRCS09 | cDNA |
| Ruby Orange Developing Flower cDNA Library | clone |
| lambda ZAPII cDNA | clone |
| Citrus sinensis BAC library | clone |
| orange flavedo E12 cDNA library | clone |
| pBLUESCRIPT | clone |
| cDNA library in lambda ZAPII | clone |
| orange Flavedo E12 cDNA library | clone |
Transcripts
Below is a list of transcript assemblies that are available for Citrus sinensis. Click the assembly name for further details.
| Assembly Name |
Analysis Name |
Date Constructed |
Stats |
| Citrus sinensis RefTrans V1 |
Citrus sinensis CGD RefTrans V1 |
2017-02-15 |
ESTs: 214,598
Reads: 1.2 billion
Contigs: 33,111 |
| Citrus sinensis Unigene v1 |
Citrus sinensis unigene v1 (Csv1) |
2010-06-22 |
Reads: 206,813
Contigs: 13,856 |
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