Citrus sinensis

Overview
GenusCitrus
Speciessinensis
Common NameSweet orange
AbbreviationC. sinensis
Also known asCitrus aurantium var. sinensis
PloidyDiploid
Chromosome Number2n=2x=18
Genome Size380 Mb
Available Markers1262
Available Maps2
Available QTLs341 (Citrus spp.)
Available MTLs0
Available Traits145 (Citrus spp.)
Available Genomes2
Libraries
The following libraries are associated with this organism.
Library NameType
Mature peel (flavedo) cDNA subtraction librarycDNA
PhyRootSw1cDNA
Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2)cDNA
Parent Washington Navel Orange Red Scale-Infested Rind cDNA Library UCRCS11-2cDNA
AbsCFruitcDNA
Citrus apomitic embryos (subtractive cDNA library)cDNA
Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) librarycDNA
Mature fruit abscission zone cDNA subtraction librarycDNA
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cDNA
Ridge pineapple sweet orange entire seedlingcDNA
Sweet orange leaf, greenhouse plantcDNA
Sweet orange leaf, young greenhouse plantcDNA
Sweet orange leaf, infected with CiLVcDNA
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cDNA
Ruby Orange Ovary at Anthesis cDNA LibrarycDNA
RindPdigScDNA
Developing fruit juice sac at 38 DAFBcDNA
Hong Anliu sweet orange SSH librarycDNA
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orangecDNA
Mature leaf blade cDNA subtraction librarycDNA
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10cDNA
Ruby Orange Developing Flower cDNA LibrarycDNA
Cara cara navel orange fruit cDNA librarycDNA
Sweet orange fruit, development stadium (3 of 6)cDNA
Ruby Orange Developing Seed cDNA Library UCRCS09-2cDNA
Mature Juice Sac from Navel Orange in Vulnus5 vectorcDNA
Citrus zygotic embryos (subtractive cDNA library)cDNA
Developing fruit flavedo at 80 DAFBcDNA
Washington Navel Orange Shoot Meristem cDNA LibrarycDNA
Developing fruit peel at 38 DAFBcDNA
EICcDNA
Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-2cDNA
Sweet orange fruit, development stadium (2 of 6)cDNA
Sweet orange leaf, field plant BcDNA
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcDNA
VSScDNA
Developing fruit flavedo at 165 DAFBcDNA
Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivarcDNA
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcDNA
BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH librarycDNA
Citrus sinensis phloemcDNA
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cDNA
Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153cDNA
Sweet orange fruit, development stadium (4 of 6)cDNA
Mature AlbedocDNA
Valencia orange young seeds cDNAcDNA
Sweet orange fruit, development stadium (1 of 6)cDNA
Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2)cDNA
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcDNA
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cDNA
Sweet orange bark, greenhouse plantcDNA
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10-2cDNA
Washington Navel Orange Stored Fruit Pulp cDNA LibrarycDNA
Flavedo MaturecDNA
Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11cDNA
sweet orange flesh cDNAcDNA
Washington Navel orange cold acclimated flavedo & albedo cDNA librarycDNA
Washington navel orange leaf axil budcDNA
AbsCFruit1cDNA
Sweet orange leaf, field plant AcDNA
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcDNA
Washington Navel Orange Stored Fruit Rind cDNA LibrarycDNA
Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivarcDNA
Different expression profile of FJWC and FJ72-1cDNA
Sweet orange fruit, development stadium (5 of 6)cDNA
Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07cDNA
Sweet orange flower, greenhouse plantcDNA
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)cDNA
Developing fruit albedo at 165 DAFBcDNA
Citrus sinensis flesh cDNA-AFLP LibrarycDNA
SLHcDNA
Sweet orange fruit, development stadium (6 of 6)cDNA
Developing fruit 24 DAFBcDNA
Ruby Orange Developing Flower cDNA Library UCRCS04-2cDNA
Citrus sinensis flavedo cellscDNA
Ruby Orange Developing Seed cDNA Library UCRCS09cDNA
Ruby Orange Developing Flower cDNA Libraryclone
lambda ZAPII cDNAclone
Citrus sinensis BAC libraryclone
orange flavedo E12 cDNA libraryclone
pBLUESCRIPTclone
cDNA library in lambda ZAPIIclone
orange Flavedo E12 cDNA libraryclone
Maps
Map Name Map Details
Citrus-SweetOrange-Ref-F1
Map Type : genetic
Population Type : F1
Citrus-Sanford/Argentina-F1-2008
Map Type : genetic
Population Type : F1
Population Size : 97
Genome Group : Sanford
Unigenes
Below is a list of unigenes available for Citrus sinensis. Click the unigene name for further details.
Unigene NameAnalysis NameDate ConstructedStats
Citrus sinensis Unigene version 1.0 (Csv1)Citrus sinensis Unigene version 1.0 (Csv1)2010-06-22Reads: 206,813
Contigs: 13,856
Germplasm
NameType
Algerianbreeding_research_material
Ambersweetcultivar
Anjiangdahongcheng 1haocultivar
Anliucultivar
Anliuchengcultivar
Anyuan C3cultivar
Atwoodcultivar
Atwood (old line)cultivar
Autumn Goldcultivar
Baia Cabulacultivar
Baia Gigantecultivar
Baianinhacultivar
Baianinha Piracicabacultivar
Baia Sanguineacultivar
Barnfieldcultivar
Bernacultivar
Bingtang orangecultivar
Biondo comune sweet orangecultivar
Blood orangebreeding_research_material
Boukhobzacultivar

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Cross References
External references for this organism
DatabaseAccession
GRIN Taxonomy 10782 
Transcripts

Below is a list of transcript assemblies that are available for Citrus sinensis. Click the assembly name for further details.

 
Assembly Name Analysis Name Date Constructed Stats
Citrus sinensis RefTrans V1 Citrus sinensis CGD RefTrans V1 2017-02-15 ESTs: 214,598 
Reads: 1.2 billion
Contigs: 33,111
Citrus sinensis Unigene v1 Citrus sinensis unigene v1 (Csv1) 2010-06-22 Reads: 206,813
Contigs: 13,856
Genomes

Current genome assemblies

Previous assembly